Western barred bandicoot, Conservation Genomics, ddRAD_AGRF, ear epithelium
Dataset size is: 27.80 GiB
Data and Resources
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52599_HGHL2BGX9_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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52599_HGHL2BGX9_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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52599_HGHL2BGX9_GCCAAT_L004_R1.fastq.gz Metadata Only FASTQ
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52599_HGHL2BGX9_GCCAAT_L003_R1.fastq.gz Metadata Only FASTQ
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52599_HGHL2BGX9_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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52599_HGHL2BGX9_CTTGTA_L003_R1.fastq.gz Metadata Only FASTQ
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52599_HGHL2BGX9_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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52599_HGHL2BGX9_CTTGTA_L004_R1.fastq.gz Metadata Only FASTQ
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OMG_NGS_AGRF_HGHL2BGX9_metadata_AM.xlsx Metadata Only XLSX
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
Access Control Date | 2020-11-20 |
Access Control Mode | date |
Sequence Data Type | illumina-ddrad |
access_rights | location information restricted |
ala_specimen_url | NA |
ancillary_notes | NA |
archive_ingestion_date | 2019-02-14 |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ddrad/BPAOPS-748/ |
birth_date | unknown |
bpa_dataset_id | 102.100.100/52599 |
bpa_work_order | 40027 |
class | Mammalia |
collection_method | unknown |
collector | Western Australia DEC |
common_name | Western barred bandicoot |
coord_uncertainty_metres | NA |
country | Australia |
custodian | Katherine Belov |
data_custodian | Carolyn Hogg |
data_generated | 2019-02-14 |
data_type | Illumina FASTQ |
dataset_url | (ingested) |
date_of_transfer | 2019-11-21 |
ddrad_data | yes |
ddrad_dataset_ids | 52599 |
death_date | unknown |
description | NextSeq ddRAD- data set ID 52599 |
dna_conc_ng_ul | unknown |
dna_extracted_by | Emma Peel |
dna_extraction_method | salting out |
exon_capture_data | no |
exon_capture_dataset_ids | NA |
experimental_design | PstI and MspI |
family | Peramelidae |
flowcell_id | HGHL2BGX9 |
folder_name | AGRF_OMG_HGHL2BGX9_52599 |
genome_data | no |
genome_dataset_ids | NA |
genus | Perameles |
habitat | unknown |
identified_by | Western Australia DEC staff |
institution_name | University of Sydney |
library_pcr_cycles | 11.0 |
library_pcr_reps | 7.0 |
library_prep_date | 2018-11-02 |
library_prep_method | ddRAD (based on Peterson et al 2012) |
library_prepared_by | Francesca Lamante |
library_status | Data available |
library_type | ddRAD_AGRF |
life_stage | not determined |
n_libraries_pooled | 2 |
omg_project | Conservation Genomics |
order | Peramelemorphia |
phylum | Chordata |
plate_name | WBB01 |
prior_genetics | unknown |
sample_submission_date | 2019-11-21 |
sequence_length | 150bp SE High-Output |
sequencing_facility | AGRF Melbourne |
sequencing_platform | illumina NextSeq 500 |
species | bougainville |
state_or_region | Western Australia |
subspecies_or_variant | bougainville |
taxon_id | 1031277 |
taxonomic_group | marsupial |
ticket | BPAOPS-748 |
tissue_collection | unknown |
tissue_type | ear epithelium |
trace_lab | no |
type_status | unknown |
voucher_number | no voucher |
wild_captive | wild |