Rufous hare-wallaby, Conservation Genomics, ddRAD_AGRF
Dataset size is: 29.29 GiB
Data and Resources
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52587_HNYVLBGX5_ACAGTG_L004_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_ACAGTG_L003_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_GCCAAT_L004_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_GTGAAA_L004_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_GTGAAA_L003_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_GCCAAT_L003_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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52587_HNYVLBGX5_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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OMG_NGS_52587_HNYVLBGX5_metadata.xlsx Metadata Only XLSX
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
Access Control Date | 2020-09-19 |
Access Control Mode | date |
Sequence Data Type | illumina-ddrad |
access_rights | location information restricted |
ala_specimen_url | NA |
archive_ingestion_date | 2019-09-20 |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ddrad/BPAOPS-859/ |
birth_date | unknown |
bpa_dataset_id | 102.100.100/52587 |
bpa_work_order | 40012 |
class | Mammalia |
collection_method | unknown |
common_name | Rufous hare-wallaby |
coord_uncertainty_metres | NA |
country | Australia |
data_custodian | Kym Ottewell |
data_generated | 2019-09-20 |
data_type | Illumina FASTQ |
dataset_url | (ingested) |
date_of_transfer | 2019-09-20 |
ddrad_data | yes |
ddrad_dataset_ids | 52587.0 |
death_date | unknown |
description | NexteSeq ddRAD, data sets data sets 52588 & 52589 |
experimental_design | PstI and NlaIII |
family | Macropodidae |
flowcell_id | HNYVLBGX5 |
folder_name | 20190920_AGRF_BPA_OMG_HNYVLBGX5 |
genome_data | no |
genome_dataset_ids | NA |
genus | Lagorchestes |
habitat | unknown |
library_location | AGRF Melbourne |
library_pcr_cycles | 11.0 |
library_pcr_reps | 7.0 |
library_prep_date | 2018-04-05 |
library_prep_method | ddRAD (based on Peterson et al 2012) |
library_prepared_by | Jacqueline Montgomery |
library_status | Data available |
library_type | ddRAD_AGRF |
n_libraries_pooled | 285 |
omg_project | Conservation Genomics |
order | Diprotodontia |
phylum | Chordata |
sample_quality | unknown |
sample_submission_date | 2019-09-20 |
sequence_length | 150bp SE High-Output |
sequencing_facility | AGRF Adelaide |
sequencing_platform | illumina NextSeq 500 |
software_version | Illumina RTA 2.4.11 |
species | hirsutus |
taxon_id | 65632 |
taxonomic_group | marsupial |
ticket | BPAOPS-859 |
trace_lab | no |
type_status | unknown |
voucher_number | no voucher |