Rufous hare-wallaby, Conservation Genomics, ddRAD_AGRF, ear epithelium
Dataset size is: 20.66 GiB
Data and Resources
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52587_HNYLKBGX5_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_GTGAAA_L003_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_ACAGTG_L003_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_ACAGTG_L004_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_GCCAAT_L003_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_GCCAAT_L004_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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52587_HNYLKBGX5_GTGAAA_L004_R1.fastq.gz Metadata Only FASTQ
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OMG_NGS_52587_HNYLKBGX5_metadata.xlsx Metadata Only XLSX
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2020-09-19 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | location information restricted |
| ala_specimen_url | NA |
| archive_ingestion_date | 2019-09-20 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ddrad/BPAOPS-858/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52587 |
| bpa_work_order | 40012 |
| class | Mammalia |
| collection_method | unknown |
| common_name | Rufous hare-wallaby |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Kym Ottewell | DBCA |
| data_custodian | Kym Ottewell |
| data_generated | 2019-09-20 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) |
| date_of_transfer | 2019-09-20 |
| ddrad_data | yes |
| ddrad_dataset_ids | 52587.0 |
| death_date | unknown |
| description | NexteSeq ddRAD, data sets data sets 52587 & 52588 |
| dna_extracted_by | Shelley McArthur | DBCA |
| dna_extraction_date | 2018-01-01 |
| dna_extraction_method | salting out |
| experimental_design | PstI and NlaIII |
| family | Macropodidae |
| flowcell_id | HNYLKBGX5 |
| folder_name | 20190920_AGRF_BPA_OMG_HNYLKBGX5 |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Lagorchestes |
| habitat | unknown |
| institution_name | Department of Biodiversity, Conservation and Attractions |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2018-04-05 |
| library_prep_method | ddRAD (based on Peterson et al 2012) |
| library_prepared_by | Jacqueline Montgomery |
| library_status | Data available |
| library_type | ddRAD_AGRF |
| n_libraries_pooled | 285 |
| omg_project | Conservation Genomics |
| order | Diprotodontia |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2019-09-20 |
| sequence_length | 150bp SE High-Output |
| sequencing_facility | AGRF Adelaide |
| sequencing_platform | illumina NextSeq 500 |
| software_version | Illumina RTA 2.4.11 |
| species | hirsutus |
| taxon_id | 65632 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-858 |
| tissue_collection | Mammal |
| tissue_type | ear epithelium |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |