Quenda, Conservation, exon capture, ear epithelium
Dataset size is: 189.65 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-09-17 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | location information restricted |
| ala_specimen_url | NA |
| ancillary_notes | D3974 |
| archive_ingestion_date | 2020-09-17 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-957/A00548_0115_AMacDonald_52633_Marsupial_gDNA/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52633 |
| bpa_library_id | 102.100.100/56289 |
| bpa_sample_id | 102.100.100/360803 |
| bpa_work_order | 40069 |
| class | Mammalia |
| collection_date | 2014-11-26 |
| collection_method | unknown |
| collector | Greg Harewood | Zootopia Environmental |
| collector_sample_id | 4.0 |
| common_name | Quenda |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Kym Ottewell | DBCA |
| data_custodian | Steve Cooper | Kym Ottewell | Anna MacDonald |
| data_generated | 2020-09-17 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) |
| date_of_transfer | 2020-09-17 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Novaseq 6000 Marsupial gDNA capture 52629, 52630, 52633 |
| dna_conc_ng_ul | 500 ng total |
| dna_extracted_by | Shelley McArthur | DBCA |
| dna_extraction_date | 2020-03-01 |
| dna_extraction_method | TNES Salt extraction |
| dna_treatment | 12 biorupter cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52633.0 |
| experimental_design | Nimblegen Exon Capture, marsupial probes V2, dual indexed |
| facility | brf |
| facility_sample_id | 56289_HTL5KDRXX_GCAGTCC |
| family | Peramelidae |
| flowcell_id | HTL5KDRXX |
| folder_name | A00548_115_AMacDonald_52629_52630_52633_Marsupial_gDNA |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Isoodon |
| habitat | unknown |
| identified_by | Greg Harewood | Zootopia Environmental |
| institution_name | Department of Biodiversity, Conservation and Attractions |
| library_comments | library ng/µL for 200-1000 bp range |
| library_location | ANU EBL |
| library_ng_ul | 76.2027963515 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2020-08-31 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Anna MacDonald | Liz Broady |
| library_status | Submitted for sequencing |
| library_type | exon capture |
| life_stage | not determined |
| location_generalisation | 1km |
| location_text | Kemerton Buffer |
| n_libraries_pooled | 288 |
| omg_project | Conservation |
| order | Peramelemorphia |
| p5_library_index_id | 19.0 |
| p5_library_index_sequence | GAATCTC |
| p5_library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACgagattcACACTCTTTCCCTACACGACGCTCTT |
| p7_library_index_id | 55.0 |
| p7_library_index_sequence | GCAGTCC |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATggactgcGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | good |
| sample_submission_date | 2020-09-17 |
| sequence_length | 100bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NovaSeq SP 200 cycle |
| sex | male |
| software_version | unknown |
| source_population | unknown |
| species | fusciventer |
| species_name | Isoodon fusciventer |
| state_or_region | Western Australia |
| subspecies_or_variant | NA |
| taxon_id | 120743 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-957 |
| tissue_collection | Mammal |
| tissue_number | D3974 |
| tissue_preservation | ethanol |
| tissue_type | ear epithelium |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |
| voucher_or_tissue_number | D3974 |
| wild_captive | wild |