Bougainville naked-tailed rat, Phylogenomics, exon capture, toe pad

Muridae, Solomys sp, NMV C118, rodent, Project Lead: Kevin Rowe

Dataset size is: 230.16 MiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members
Access Control Date 2021-04-06
Access Control Mode date
Sequence Data Type illumina-exoncapture
access_rights no restrictions
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2020-04-06
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-895/
birth_date unknown
bpa_dataset_id 102.100.100/52625
bpa_library_id 102.100.100/55253
bpa_sample_id 102.100.100/56528
bpa_work_order 40056
class Mammalia
collection_date 1915-05-03
collection_method unknown
collector Ministry of Defence
collector_sample_id NA
common_name Bougainville naked-tailed rat
coord_uncertainty_metres unknown
country Papua New Guinea
custodian Kevin C Rowe | Museums Victoria
data_custodian Kevin Rowe
data_generated 2020-04-06
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2020-04-06
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Nextseq500 150PE - exon capture marsupial
dna_conc_ng_ul 3.77
dna_extracted_by Kevin C Rowe
dna_extraction_date 2019-07-29
dna_extraction_method Phenol Chloroform Isoamyl
dna_treatment 0 bioruptor cycles
exon_capture_data yes
exon_capture_dataset_ids 52625.0
experimental_design Nimblegen Exon Capture – dual index
facility brf
facility_sample_id 55253_H53KCAFX2_ACTATCA
family Muridae
file 55253_H53KCAFX2_ACTATCA_S11_L001_R1_001.fastq.gz | 55253_H53KCAFX2_ACTATCA_S11_L001_R2_001.fastq.gz | 55253_H53KCAFX2_ACTATCA_S11_L002_R1_001.fastq.gz | 55253_H53KCAFX2_ACTATCA_S11_L002_R2_001.fastq.gz
flowcell_id H53KCAFX2
folder_name NB501086_0362_AMacDonald_OzMammals_Rodent_gDNA_exon_capture
genome_data no
genome_dataset_ids NA
genus Solomys
habitat unknown
identified_by Kevin Rowe
institution_name Museums Victoria
library_comments library ng/µL for 200-800 bp range
library_location ANU EBL
library_ng_ul 22.5707733211
library_pcr_cycles 15.0
library_pcr_reps 2.0
library_prep_date 2019-09-27
library_prep_method Meyer and Kircher protocol
library_prepared_by Kevin Rowe
library_status Data available
library_type exon capture
life_stage not determined
location_text unknown
n_libraries_pooled 60
omg_project Phylogenomics
order Rodentia
p5_library_index_id 13
p5_library_index_sequence ACTATCA
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACtgatagtACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 13
p7_library_index_sequence ACTATCA
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATtgatagtGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality highly degraded
sample_submission_date 2020-04-06
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NextSeq mid output 300 cycle
sex not determined
software_version unknown
source_population unknown
species sp
state_or_region unknown
subspecies_or_variant NA
taxon_id 442620
taxonomic_group rodent
ticket BPAOPS-895
tissue_collection Mammalogy
tissue_number NMV C118
tissue_preservation dried
tissue_type toe pad
trace_lab no
type_status unknown
voucher_number NMV C118
voucher_or_tissue_number NMV C118
wild_captive wild