Moss-forest rat, Phylogenomics, exon capture, tail
Dataset size is: 711.54 MiB
Data and Resources
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55230_H55FWAFX2_CCTCTAG_S82_L001... Metadata Only FASTQ
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55230_H55FWAFX2_CCTCTAG_S82_L004... Metadata Only FASTQ
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55230_H55FWAFX2_CCTCTAG_S82_L004... Metadata Only FASTQ
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55230_H55FWAFX2_CCTCTAG_S82_L003... Metadata Only FASTQ
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55230_H55FWAFX2_CCTCTAG_S82_L002... Metadata Only FASTQ
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55230_H55FWAFX2_CCTCTAG_S82_L002... Metadata Only FASTQ
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55230_H55FWAFX2_CCTCTAG_S82_L001... Metadata Only FASTQ
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55230_H55FWAFX2_CCTCTAG_S82_L003... Metadata Only FASTQ
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OMG_library_metadata_52624.xlsx Metadata Only XLSX
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-04-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-exoncapture |
| access_rights | location information restricted |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2020-04-01 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-894/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52624 |
| bpa_library_id | 102.100.100/55230 |
| bpa_sample_id | 102.100.100/56505 |
| bpa_work_order | 40056 |
| class | Mammalia |
| collection_date | unknown |
| collection_method | unknown |
| collector | Ken P Aplin |
| collector_sample_id | NA |
| common_name | Moss-forest rat |
| coord_uncertainty_metres | NA |
| country | Papua New Guinea |
| custodian | Steve Donnellan |
| data_custodian | Kevin Rowe |
| data_generated | 2020-04-01 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) |
| date_of_transfer | 2020-04-01 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Nextseq500 150PE - exon capture marsupial |
| dna_conc_ng_ul | 270.0 |
| dna_extracted_by | Kyle Armstrong |
| dna_extraction_date | unknown |
| dna_extraction_method | unknown |
| dna_treatment | 12 bioruptor cycles |
| exon_capture_data | yes |
| exon_capture_dataset_ids | 52624.0 |
| experimental_design | Nimblegen Exon Capture – single index |
| facility | brf |
| facility_sample_id | 55230_H55FWAFX2_CCTCTAG |
| family | Muridae |
| file | 55230_H55FWAFX2_CCTCTAG_S82_L001_R1_001.fastq.gz | 55230_H55FWAFX2_CCTCTAG_S82_L001_R2_001.fastq.gz | 55230_H55FWAFX2_CCTCTAG_S82_L002_R1_001.fastq.gz | 55230_H55FWAFX2_CCTCTAG_S82_L002_R2_001.fastq.gz |
| flowcell_id | H55FWAFX2 |
| folder_name | NB501086_0361_AMacDonald_OzMammals_Rodent_gDNA_exon_capture |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Rattus |
| habitat | unknown |
| identified_by | Ken Aplin |
| institution_name | Australian Biological Tissue Collection, South Australian Museum |
| library_location | ANU EBL |
| library_ng_ul | 5.1726675177 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 2.0 |
| library_prep_date | 2019-09-27 |
| library_prep_method | Meyer and Kircher protocol |
| library_prepared_by | Kevin Rowe |
| library_status | Data available |
| library_type | exon capture |
| life_stage | not determined |
| location_generalisation | 1km |
| location_text | Hides Ridge |
| n_libraries_pooled | 94 |
| omg_project | Phylogenomics |
| order | Rodentia |
| p5_library_index_id | NA |
| p5_library_index_sequence | NA |
| p5_library_oligo_sequence | NA |
| p7_library_index_id | 84.0 |
| p7_library_index_sequence | CCTCTAG |
| p7_library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATctagaggGTGACTGGAGTTCAGACGTGT |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | good |
| sample_submission_date | 2020-04-01 |
| sequence_length | 150bp PE |
| sequencing_facility | BRF |
| sequencing_platform | Illumina NextSeq mid output 300 cycle |
| sex | not determined |
| software_version | unknown |
| source_population | unknown |
| species | niobe |
| species_name | Rattus niobe |
| state_or_region | Southern Highlands Province |
| subspecies_or_variant | NA |
| taxon_id | 472762 |
| taxonomic_group | rodent |
| ticket | BPAOPS-894 |
| tissue_collection | Mammal |
| tissue_number | ABTC141190 |
| tissue_preservation | ethanol |
| tissue_type | tail |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |
| voucher_or_tissue_number | ABTC141190 |
| wild_captive | wild |