Lesser bilby, liver
Dataset size is: 101.86 GiB
Data and Resources
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352391_NMVC7295liver.bam.md5sum Metadata Only MD5
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352391_NMVC7295liver.hard-filter... Metadata Only VCF
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352391_NMVC7295liver.bam.bai Metadata Only
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352391_NMVC7295liver.hard-filter... Metadata Only MD5
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352391_NMVC7295liver.multiqc_report.html Metadata Only HTML
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352391_NMVC7295liver.hard-filter... Metadata Only GVCF
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352391_NMVC7295liver.bam Metadata Only BAM
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352391_NMVC7295liver.hard-filter... Metadata Only MD5
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2022-07-21 |
| Access Control Mode | date |
| Sequence Data Type | analysed-data |
| access_rights | no restrictions |
| ala_specimen_url | https://bie.ala.org.au/species/urn:lsid:biodiversity.org.au:afd.taxon:284d8e3c-2ffe-4c46-a6f7-74d8c78dc9a9#overview |
| analysis_date | 2021-07-05 |
| analysis_description | Aligment to reference genome and variant calling |
| analysis_method | DRAGEN Germline |
| analysis_method_version | 3.8.4 |
| analysis_name | mMacLeu352347ReSG.1 |
| analysis_qc | Full QC report attached |
| ancillary_notes | duplicate sample from this specimen - to get more DNA for genomics - DNA sent to Ramaciotti |
| archive_ingestion_date | 2021-07-21 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/analysed/BPAOPS-1118/lesserbilbies/ |
| bioplatforms_project | Oz Mammals Genomics Initiative |
| bioplatforms_secondarydata_id | 102.100.100/352391 |
| birth_date | unknown |
| bpa_library_id | 102.100.100/352375 |
| bpa_sample_id | 102.100.100/352347 |
| class | Mammalia |
| collection_date | 1895 |
| collection_method | unknown |
| collector | B P Byrne |
| collector_sample_id | NA |
| common_name | Lesser bilby |
| computational_infrastructure | Illumina Basespace |
| contact_person | Carolyn Hogg |
| coord_uncertainty_metres | unknown |
| country | Australia |
| custodian | Kevin C Rowe | Museums Victoria |
| data_generated | 2021-07-21 |
| data_type | Analysed Data |
| dataset_context | Resequenced genome |
| dataset_id | 352377 |
| dataset_id_description | Bioplatforms Australia |
| date_of_transfer | 2021-07-21 |
| ddrad_data | NA |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | Lesser Bilbies Analysed Data |
| dna_conc_ng_ul | 0.208 |
| dna_extracted_by | Anna MacDonald |
| dna_extraction_date | 2020-11-05 |
| dna_extraction_method | Qiagen DNEasy modified for trace samples |
| exon_capture_data | NA |
| exon_capture_dataset_ids | NA |
| family | Thylacomyidae |
| folder_name | lesserbilbies |
| genome_coverage | 0.5 |
| genus | Macrotis |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Museums Victoria |
| latitude | -25.5 |
| library_id | 352375 |
| library_id_description | Bioplatforms Australia |
| life_stage | not determined |
| location_text | MacDonnell, Charlotte Waters |
| longitude | 135.42 |
| order | Peramelemorphia |
| phylum | Chordata |
| prior_genetics | unknown |
| reference_genome | bilby.v1.4.3.hypo.hirise.curation.renamed.fasta |
| sample_id | 352347 |
| sample_id_description | Bioplatforms Australia |
| sample_quality | unknown |
| sample_submission_date | 2021-07-21 |
| scientific_name | Macrotis leucura |
| sequencing_technology | NovaSeq 6000 S2 2x150bp_Flowcell |
| sex | female |
| source_population | unknown |
| species | leucura |
| species_name | Macrotis leucura |
| state_or_region | Northern Territory |
| subspecies_or_variant | NA |
| system_used | Illumina Basespace |
| taxon_id | 92650 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-1118 |
| tissue_collection | Mammalogy |
| tissue_number | NMV C7295 |
| tissue_preservation | spirit |
| tissue_type | liver |
| trace_lab | yes |
| type_status | unknown |
| version_method_version_link | https://www.illumina.com/products/by-type/informatics-products/basespace-sequence-hub/apps/dragen-germline.html |
| voucher_number | NMV C7295 |
| voucher_or_tissue_number | NMV C7295 |
| wild_captive | unknown |