Lesser bilby, skin

Thylacomyidae, Macrotis leucura, BMNH 1883.10.19.17, marsupial, Project Lead:

Dataset size is: 78.30 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members
Access Control Date 2022-07-21
Access Control Mode date
Sequence Data Type analysed-data
access_rights no restrictions
ala_specimen_url NA
analysis_date 2021-07-05
analysis_description Aligment to reference genome and variant calling
analysis_method DRAGEN Germline
analysis_method_version 3.8.4
analysis_name mMacLeu40262ReSG.1
analysis_qc Full QC report attached
ancillary_notes Peragale leucura. NB taxon_ID is for genus, not species
archive_ingestion_date 2021-07-21
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/analysed/BPAOPS-1118/lesserbilbies/
bioplatforms_project Oz Mammals Genomics Initiative
bioplatforms_secondarydata_id 102.100.100/352389
birth_date unknown
bpa_library_id 102.100.100/352373
bpa_sample_id 102.100.100/40262
class Mammalia
collection_date unknown
collection_method unknown
collector J Beasley
collector_sample_id NA
common_name Lesser bilby
computational_infrastructure Illumina Basespace
contact_person Carolyn Hogg
coord_uncertainty_metres unknown
country Australia
custodian Roberto Portela Miguez
data_generated 2021-07-21
data_type Analysed Data
dataset_context Resequenced genome
dataset_id 352377
dataset_id_description Bioplatforms Australia
date_of_transfer 2021-07-21
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Lesser Bilbies Analysed Data
dna_conc_ng_ul 0.96
dna_extracted_by Anna MacDonald
dna_extraction_date 2017-09-04
dna_extraction_method Qiagen DNEasy modified for trace samples
exon_capture_data yes
exon_capture_dataset_ids 52584
family Thylacomyidae
folder_name lesserbilbies
genome_coverage 2.2
genome_data no
genome_dataset_ids NA
genus Macrotis
habitat unknown
identified_by unknown
institution_name Natural History Museum, London
library_id 352373
library_id_description Bioplatforms Australia
life_stage not determined
location_text unknown
order Peramelemorphia
phylum Chordata
prior_genetics unknown
reference_genome bilby.v1.4.3.hypo.hirise.curation.renamed.fasta
sample_id 40262
sample_id_description Bioplatforms Australia
sample_quality unknown
sample_submission_date 2021-07-21
scientific_name Macrotis leucura
sequencing_technology NovaSeq 6000 S2 2x150bp_Flowcell
sex not determined
source_population unknown
species leucura
state_or_region unknown
subspecies_or_variant NA
system_used Illumina Basespace
taxon_id 92650
taxonomic_group marsupial
ticket BPAOPS-1118
tissue_collection Mammal
tissue_number BMNH 1883.10.19.17
tissue_preservation dried
tissue_type skin
trace_lab yes
type_status holotype of Peragale leucura
version_method_version_link https://www.illumina.com/products/by-type/informatics-products/basespace-sequence-hub/apps/dragen-germline.html
voucher_number BMNH 1883.10.19.17
voucher_or_tissue_number BMNH 1883.10.19.17
wild_captive unknown