Lesser bilby
Dataset size is: 6.13 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
Access Control Date | 2022-07-21 |
Access Control Mode | date |
Sequence Data Type | analysed-data |
access_rights | no restrictions |
analysis_date | 2021-07-05 |
analysis_description | Joint genotyping of 3 lesser bilby resequenced genome samples to generate a common set of variants |
analysis_method | DRAGEN Joint Genotyping |
analysis_method_version | 3.8.4 |
analysis_name | mMacLeu3ResSG.1 |
archive_ingestion_date | 2021-07-21 |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/analysed/BPAOPS-1117/joint_genotyping/ |
bioplatforms_project | Oz Mammals Genomics Initiative |
bioplatforms_secondarydata_id | 102.100.100/352344 |
birth_date | unknown |
class | Mammalia |
collection_method | unknown |
collector_sample_id | NA |
common_name | Lesser bilby |
computational_infrastructure | Illumina Basespace |
contact_person | Carolyn Hogg |
coord_uncertainty_metres | unknown |
country | Australia |
data_generated | 2021-07-21 |
data_type | Analysed Data |
dataset_context | Common variant set |
dataset_id | 352377 |
dataset_id_description | Bioplatforms Australia |
date_of_transfer | 2021-07-21 |
ddrad_dataset_ids | NA |
death_date | unknown |
description | Joint Genotyping Lesser and Greater Bilbies Analysed Data |
dna_extracted_by | Anna MacDonald |
family | Thylacomyidae |
folder_name | joint_genotyping |
genus | Macrotis |
habitat | unknown |
identified_by | unknown |
library_id | 352373, 352374, 352375 |
library_id_description | Bioplatforms Australia |
life_stage | not determined |
order | Peramelemorphia |
phylum | Chordata |
prior_genetics | unknown |
reference_genome | bilby.v1.4.3.hypo.hirise.curation.renamed.fasta |
sample_id | 40262, 361852, 352347 |
sample_id_description | Bioplatforms Australia |
sample_quality | unknown |
sample_submission_date | 2021-07-21 |
scientific_name | Macrotis leucura |
sequencing_technology | NovaSeq 6000 S2 2x150bp_Flowcell |
source_population | unknown |
species | leucura |
system_used | Illumina Basespace |
taxon_id | 92650 |
taxonomic_group | marsupial |
ticket | BPAOPS-1117 |
trace_lab | yes |
version_method_version_link | https://www.illumina.com/products/by-type/informatics-products/basespace-sequence-hub/apps/edico-genome-inc-dragen-joint-genotyping-pipeline.html |
wild_captive | unknown |