Northern quoll, Whole genomes, genome linked-read, fibroblast cell line from footpad
Dataset size is: 147.38 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2020-11-24 |
| Access Control Mode | date |
| Sequence Data Type | illumina-10x |
| access_rights | unknown |
| ala_specimen_url | NA |
| ancillary_notes | Several DNA extractions sent to Ramaciotti for QC. The one used was FRA7478 A1. Animal named "Anarchy" |
| archive_ingestion_date | 2019-11-25 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-874/ |
| birth_date | 2017-10-31 |
| bpa_dataset_id | 102.100.100/52619 |
| bpa_library_id | 102.100.100/54608 |
| bpa_sample_id | 102.100.100/41988 |
| bpa_work_order | 40053 |
| class | Mammalia |
| collection_date | 2019-06-25 |
| collection_method | footpad used to established fibroblast cell line |
| collector | Stephen Frankenberg |
| collector_sample_id | GAN: YLY17-02614 |
| common_name | Northern quoll |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Stephen Frankenberg |
| data_custodian | Sam Banks | Paul Sunnucks |
| data_generated | 2019-11-25 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) |
| date_of_transfer | 2019-11-25 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | 2019-06-25 |
| description | 10X Genomics/NovaSeq 6000- Dasyurus DNA |
| dna_conc_ng_ul | unknown |
| dna_extracted_by | Stephen Frankenberg |
| dna_extraction_date | 2019-10-07 |
| dna_extraction_method | Qiagen PureGene kit |
| dna_treatment | No size selection |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 10X Chromium, one NovaSeq 6000 S1 2x150bp lane |
| facility_sample_id | FRA7478 |
| family | Dasyuridae |
| file | 54608_S1_L001_I1_001.fastq.gz | 54608_S1_L001_R1_001.fastq.gz | 54608_S1_L001_R2_001.fastq.gz |
| flow_id | 10X_HGYCLDRXX |
| flowcell_id | HGYCLDRXX |
| folder_name | 54608_OMG_UNSW_10X_HGYCLDRXX |
| genome_data | yes |
| genome_dataset_ids | 52619.0 |
| genus | Dasyurus |
| habitat | unknown |
| identified_by | unknown |
| institution_name | University of Melbourne |
| library_index_id | Index E4 |
| library_index_sequence | TTCGCCCT; GGATGGGC; AATCAATG; CCGATTAA |
| library_location | Ramaciotti, UNSW |
| library_ng_ul | 13.3 |
| library_oligo_sequence | NA |
| library_pcr_cycles | 10.0 |
| library_pcr_reps | NA |
| library_prep_date | 2019-11-11 |
| library_prep_method | 10X Genomics Chromium |
| library_prepared_by | Ramaciotti, UNSW |
| library_status | Sequenced |
| library_type | genome linked-read |
| life_stage | adult organism |
| location_text | Berry Springs |
| n_libraries_pooled | 1 |
| omg_project | Whole genomes |
| order | Dasyuromorphia |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2019-11-25 |
| sequence_length | 150bp PE |
| sequencing_facility | Ramaciotti, UNSW |
| sequencing_platform | NovaSeq 6000 |
| sex | male |
| software_version | bcltofastq2 v2.19 |
| source_population | Territory Wildlife Park |
| species | hallucatus |
| state_or_region | Northern Territory |
| subspecies_or_variant | NA |
| taxon_id | 9280 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-874 |
| tissue_collection | unknown |
| tissue_number | GAN: YLY17-02614 |
| tissue_preservation | unknown |
| tissue_type | fibroblast cell line from footpad |
| trace_lab | no |
| type_status | unknown |
| voucher_id | GAN: YLY17-02614 |
| voucher_number | no voucher |
| voucher_or_tissue_number | GAN: YLY17-02614 |
| wild_captive | captive |