Numbat, Whole genomes, genome linked-read, lung
Dataset size is: 146.50 GiB
Data and Resources
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54214_S2_L001_R2_001.fastq.gz Metadata Only FASTQ
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54214_S2_L001_R1_001.fastq.gz Metadata Only FASTQ
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54214_S2_L002_R2_001.fastq.gz Metadata Only FASTQ
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54214_S2_L002_R1_001.fastq.gz Metadata Only FASTQ
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54214_S2_L002_I1_001.fastq.gz Metadata Only FASTQ
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52610_OMG_UNSW_10X_H7L7YDRXX_met... Metadata Only XLSX
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54214_S2_L001_I1_001.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2020-06-11 |
| Access Control Mode | date |
| Sequence Data Type | illumina-10x |
| access_rights | location information restricted |
| ala_specimen_url | NA |
| ancillary_notes | Two DNA extracts from this specimen from different tissues |
| archive_ingestion_date | 2019-06-14 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-826/ |
| birth_date | 2010-01-30 |
| bpa_dataset_id | 102.100.100/52610 |
| bpa_library_id | 102.100.100/54214 |
| bpa_sample_id | 102.100.100/41499 |
| bpa_work_order | 40046 |
| class | Mammalia |
| collection_date | 2010-02-10 |
| collection_method | captive |
| collector | Perth Zoo |
| collector_sample_id | MIG12-29965423 |
| common_name | Numbat |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Katherine Belov |
| data_custodian | Kathy Belov | Carolyn Hogg |
| data_generated | 2019-06-14 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) |
| date_of_transfer | 2019-06-12 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | 2019-01-23 |
| description | 10X Genomics/NovaSeq 6000- Numbat DNA |
| dna_conc_ng_ul | 51ng/uL |
| dna_extracted_by | Emma Peel |
| dna_extraction_date | 2019-05-16 |
| dna_extraction_method | Qiagen MagAttract |
| dna_treatment | No size selection |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 10X Chromium, half of a NovaSeq 6000 S1 2x150bp flowcell |
| facility_sample_id | PEE6755A3 |
| family | Myrmecobiidae |
| file | 54214_S2_L001_R1_001.fastq.gz| 54214_S2_L001_R2_001.fastq.gz | 54214_S2_L001_I1_001.fastq.gz | 54214_S2_L002_R1_001.fastq.gz | 54214_S2_L002_R2_001.fastq.gz | 54214_S2_L002_I1_001.fastq.gz |
| flow_id | 10X_H7L7YDRXX |
| flowcell_id | H7L7YDRXX |
| folder_name | 52610_OMG_UNSW_10X_H7L7YDRXX |
| genome_data | yes |
| genome_dataset_ids | 52610.0 |
| genus | Myrmecobius |
| habitat | Captive housing |
| identified_by | Simone Vitali |
| institution_name | University of Sydney |
| library_index_id | Index C2 |
| library_index_sequence | CCTAGACC; ATCTCTGT; TAGCTCTA; GGAGAGAG |
| library_location | Ramaciotti, UNSW |
| library_ng_ul | 7.22 |
| library_oligo_sequence | NA |
| library_pcr_cycles | 10 cycles |
| library_pcr_reps | NA |
| library_prep_date | 2019-05-31 |
| library_prep_method | 10X Genomics Chromium |
| library_prepared_by | Ramaciotti, UNSW |
| library_status | Sequenced |
| library_type | genome linked-read |
| life_stage | adult organism |
| location_generalisation | 1km |
| location_text | Perth Zoo |
| n_libraries_pooled | 2 |
| omg_project | Whole genomes |
| order | Dasyuromorphia |
| phylum | Chordata |
| prior_genetics | NA |
| sample_quality | fresh frozen at -80 |
| sample_submission_date | 2019-06-12 |
| sequence_length | 150bp PE |
| sequencing_facility | Ramaciotti, UNSW |
| sequencing_platform | NovaSeq 6000 |
| sex | female |
| software_version | bcltofastq2 v2.19 |
| source_population | Perth Zoo |
| species | fasciatus |
| species_name | Myrmecobius fasciatus |
| state_or_region | Western Australia |
| subspecies_or_variant | NA |
| taxon_id | 55782 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-826 |
| tissue_collection | Perth Zoo |
| tissue_number | MIG12-29965423 |
| tissue_preservation | frozen -80C |
| tissue_type | lung |
| trace_lab | no |
| type_status | unknown |
| voucher_id | MIG12-29965423 |
| voucher_number | no voucher |
| voucher_or_tissue_number | MIG12-29965423 |
| wild_captive | captive |