Greater bilby, Whole genomes, genome linked read, spleen
Dataset size is: 142.92 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2020-03-19 |
| Access Control Mode | date |
| Sequence Data Type | illumina-10x |
| access_rights | location information restricted |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2019-03-25 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-797/ |
| birth_date | 2010 |
| bpa_dataset_id | 102.100.100/52604 |
| bpa_library_id | 102.100.100/54213 |
| bpa_sample_id | 102.100.100/41196 |
| bpa_work_order | 40035 |
| class | Mammalia |
| collection_date | 2018 |
| collection_method | individual euthanased due to medical conditions |
| collector | Peter Mawson | Perth Zoo |
| collector_sample_id | 00-06F0-4DBB_bilby2 |
| common_name | Greater bilby |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Katherine Belov |
| data_custodian | Kathy Belov | Carolyn Hogg |
| data_generated | 2019-03-25 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) |
| date_of_transfer | 2019-03-20 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | 2018 |
| description | 10X Genomics/NovaSeq 6000- 41196 Bilby DNA |
| dna_conc_ng_ul | unknown |
| dna_extracted_by | Emma Peel |
| dna_extraction_date | unknown |
| dna_extraction_method | unknown |
| dna_treatment | >50kb size selection |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 10X Chromium, NovaSeq 6000 |
| facility_sample_id | NA |
| family | Thylacomyidae |
| file | 41196_S1_L001_R1_001.fastq.gz | 41196_S1_L001_R2_001.fastq.gz | |
| flow_id | 10X_H3FFVDRXX |
| flowcell_id | H3FFVDRXX |
| folder_name | 41196_OMG_UNSW_10X_H3FFVDRXX |
| genome_data | yes |
| genome_dataset_ids | 52604.0 |
| genus | Macrotis |
| habitat | unknown |
| identified_by | Peter Mawson | Perth Zoo |
| institution_name | University of Sydney |
| library_comments | NA |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | Ramaciotti |
| library_ng_ul | unknown |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_method | 10X Genomics Chromium |
| library_prepared_by | Ramaciotti |
| library_status | Data available |
| library_type | genome linked read |
| life_stage | adult organism |
| location_generalisation | 1km |
| location_text | Perth Zoo |
| n_libraries_pooled | 1 |
| omg_project | Whole genomes |
| order | Peramelemorphia |
| phylum | Chordata |
| prior_genetics | NA |
| sample_quality | fresh frozen at -80 |
| sample_submission_date | 2019-03-20 |
| sequence_length | 150bp PE |
| sequencing_facility | Ramaciotti |
| sequencing_platform | Illumina HiSeq Xten |
| sex | female |
| software_version | bcl2fastq v2.20.0.422 |
| source_population | Australia, Western Australia, Kanyana Wildlife Rehab Centre, Monarto, Perth Zoo |
| species | lagotis |
| species_name | Macrotis lagotis |
| state_or_region | Western Australia |
| subspecies_or_variant | NA |
| taxon_id | 92651 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-797 |
| tissue_collection | unknown |
| tissue_number | 00-06F0-4DBB_bilby2 |
| tissue_preservation | frozen -80C |
| tissue_type | spleen |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |
| voucher_or_tissue_number | 00-06F0-4DBB_bilby2 |
| wild_captive | captive |