Eastern bettong, Whole genomes, genome linked read, muscle
Dataset size is: 134.55 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2019-04-03 |
| Access Control Mode | date |
| Sequence Data Type | illumina-10x |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | Two extractions from the same sample of this specimen. Dead pouch young retrieved from trap during population monitoring. Animal location is Mulligan's Flat, with this pouch young born approximately 3 years after the population was founded by animals translocated from Tasmania. Specimen not currently lodged in a museum collection. Voucher ID and collection details will be updated should this happen in future. |
| archive_ingestion_date | 2018-04-03 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-567/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/40131 |
| bpa_library_id | 102.100.100/52876 |
| bpa_sample_id | 102.100.100/40254 |
| bpa_work_order | 40005 |
| class | Mammalia |
| collection_date | 2016-04-01 |
| collection_method | trap |
| collector | Adrian Manning |
| collector_sample_id | Bga_MF001 |
| common_name | Eastern bettong |
| coord_uncertainty_metres | 200.0 |
| country | Australia |
| custodian | Sam Banks |
| data_custodian | Sam Banks |
| data_generated | 2018-04-03 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2018-04-03 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | 10X Genomics- 102.100.100/40254 |
| dna_conc_ng_ul | 170.0 |
| dna_extracted_by | Kristen Abicair (ANU) |
| dna_extraction_date | 2017-05-23 |
| dna_extraction_method | Qiagen genomic tip |
| dna_treatment | >50kb size selection |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE) |
| facility_sample_id | FR07935851 |
| family | Potoroidae |
| file | 40254_S1_L001_R1_001.fastq.gz | 40254_S1_L001_R2_001.fastq.gz | 40254_S1_L008_R1_001.fastq.gz | 40254_S1_L008_R2_001.fastq.gz |
| flow_id | 10X_H7JL7CCXY |
| flowcell_id | H7JL7CCXY |
| folder_name | 40254_OMG_UNSW_10X_H7JL7CCXY |
| genome_data | yes |
| genome_dataset_ids | 40131.0 |
| genus | Bettongia |
| habitat | Woodland |
| identified_by | Adrian Manning |
| institution_name | Australian National University |
| latitude | -35.1668 |
| library_comments | NA |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | Ramaciotti |
| library_ng_ul | unknown |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_method | 10X Chromium |
| library_prepared_by | Ramaciotti |
| library_status | Not yet extracted |
| library_type | genome linked read |
| life_stage | pouch young |
| location_text | Mulligan's Flat Woodland Sanctuary |
| longitude | 149.1669 |
| n_libraries_pooled | 1 |
| omg_project | Whole genomes |
| order | Diprotodontia |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2018-04-03 |
| sequence_length | 150bp PE |
| sequencing_facility | Ramaciotti |
| sequencing_platform | Illumina HiSeq Xten |
| sex | male |
| software_version | Illumina bcl2fastq 2.19.0 |
| source_population | Mulligan's Flat Woodland Sanctuary |
| species | gaimardi |
| species_name | Bettongia gaimardi |
| state_or_region | Australian Capital Territory |
| subspecies_or_variant | cuniculus |
| taxon_id | 223568 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-567 |
| tissue_collection | Fenner School |
| tissue_number | Bga_MF001 |
| tissue_preservation | ethanol | frozen |
| tissue_type | muscle |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |
| voucher_or_tissue_number | Bga_MF001 |
| wild_captive | wild |