Whole genomes, genome linked read
Dataset size is: 180.67 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2018-10-24 |
| Access Control Mode | date |
| Sequence Data Type | illumina-10x |
| access_rights | temporary embargo |
| ala_specimen_url | NA |
| archive_ingestion_date | 2017-11-25 |
| archive_name | 171009_ST-K00108_0067_BHMCKTBBXX.tar |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw_agrf/BPAOPS-365/ |
| bpa_dataset_ids | 102.100.100/40137, 102.100.100/40139 |
| bpa_library_ids | 102.100.100/52872, 102.100.100/52873 |
| bpa_sample_ids | 102.100.100/40136, 102.100.100/40138 |
| bpa_work_order | 40008 |
| class | Mammalia |
| collection_method | unknown |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Andrew Weeks |
| data_custodian | Andrew Weeks |
| data_generated | 2017-11-25 |
| data_type | Illumina bcl (Illumina run directory) |
| dataset_url | https://data.bioplatforms.com/dataset/bpa-omg-10x-raw-illumina-171009_st-k00108_0067_bhmcktbbxx_tar-hmcktbbxx |
| date_of_transfer | 2017-10-24 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| description | 10X Genomics- 102.100.100/52872 and102.100.100/52873 - bcl |
| dna_conc_ng_ul | unknown |
| dna_extracted_by | Rahul Vivek Rane |
| dna_extraction_method | Qiagen genomic tip 20G |
| dna_treatment | >50kb size selection |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE) |
| facility_sample_id | unknown |
| file | 171009_ST-K00108_0067_BHMCKTBBXX.tar |
| flow_id | HMCKTBBXX |
| flowcell_id | HMCKTBBXX |
| folder_name | 171009_ST-K00108_0067_BHMCKTBBXX.tar |
| genome_data | yes |
| institution_name | University of Melbourne |
| library_comments | NA |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | AGRF |
| library_ng_ul | unknown |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_method | 10X Chromium |
| library_status | Sequenced |
| library_type | genome linked read |
| life_stage | adult organism |
| n_libraries_pooled | 1 |
| omg_project | Whole genomes |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | limited degradation |
| sample_submission_date | 2017-10-24 |
| sequence_length | 150bp PE |
| sequencing_facility | AGRF |
| sequencing_platform | Illumina HiSeq 4000 |
| sex | female |
| software_version | RTA 2.7.7 |
| state_or_region | Victoria |
| taxonomic_group | marsupial |
| ticket | BPAOPS-365 |
| tissue_collection | Mammal |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |