Whole genomes, genome linked read

marsupial, Project Lead: Andrew Weeks

Dataset size is: 180.67 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members
Access Control Date 2018-10-24
Access Control Mode date
Sequence Data Type illumina-10x
access_rights temporary embargo
ala_specimen_url NA
archive_ingestion_date 2017-11-25
archive_name 171009_ST-K00108_0067_BHMCKTBBXX.tar
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw_agrf/BPAOPS-365/
bpa_dataset_ids 102.100.100/40137, 102.100.100/40139
bpa_library_ids 102.100.100/52872, 102.100.100/52873
bpa_sample_ids 102.100.100/40136, 102.100.100/40138
bpa_work_order 40008
class Mammalia
collection_method unknown
coord_uncertainty_metres NA
country Australia
custodian Andrew Weeks
data_custodian Andrew Weeks
data_generated 2017-11-25
data_type Illumina bcl (Illumina run directory)
dataset_url https://data.bioplatforms.com/dataset/bpa-omg-10x-raw-illumina-171009_st-k00108_0067_bhmcktbbxx_tar-hmcktbbxx
date_of_transfer 2017-10-24
ddrad_data no
ddrad_dataset_ids NA
description 10X Genomics- 102.100.100/52872 and102.100.100/52873 - bcl
dna_conc_ng_ul unknown
dna_extracted_by Rahul Vivek Rane
dna_extraction_method Qiagen genomic tip 20G
dna_treatment >50kb size selection
exon_capture_data no
exon_capture_dataset_ids NA
experimental_design 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE)
facility_sample_id unknown
file 171009_ST-K00108_0067_BHMCKTBBXX.tar
flow_id HMCKTBBXX
flowcell_id HMCKTBBXX
folder_name 171009_ST-K00108_0067_BHMCKTBBXX.tar
genome_data yes
institution_name University of Melbourne
library_comments NA
library_index_id NA
library_index_sequence NA
library_location AGRF
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_method 10X Chromium
library_status Sequenced
library_type genome linked read
life_stage adult organism
n_libraries_pooled 1
omg_project Whole genomes
phylum Chordata
prior_genetics unknown
sample_quality limited degradation
sample_submission_date 2017-10-24
sequence_length 150bp PE
sequencing_facility AGRF
sequencing_platform Illumina HiSeq 4000
sex female
software_version RTA 2.7.7
state_or_region Victoria
taxonomic_group marsupial
ticket BPAOPS-365
tissue_collection Mammal
trace_lab no
type_status unknown
voucher_number no voucher