Eastern barred bandicoot, Whole genomes, genome linked read, ear epithelium
Dataset size is: 72.43 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2019-08-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-10x |
| access_rights | temporary embargo |
| ala_specimen_url | NA |
| ancillary_notes | This animal was bred in captivity (Melbourne Zoo) and released onto Churchill Island, where it was found deceased. |
| archive_ingestion_date | 2018-08-21 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_processed/BPAOPS-670/ |
| birth_date | 2015-01-19 |
| bpa_dataset_id | 102.100.100/52592 |
| bpa_library_id | 102.100.100/52872 |
| bpa_sample_id | 102.100.100/40136 |
| bpa_work_order | 40015 |
| class | Mammalia |
| collection_date | 2015-08-27 |
| collection_method | unknown |
| collector | Michael Lynch | Zoos Victoria |
| collector_sample_id | 73589A4 |
| common_name | Eastern barred bandicoot |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Andrew Weeks |
| data_custodian | Andrew Weeks |
| data_generated | 2018-08-21 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) |
| date_of_transfer | 2018-08-13 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | 2015-08-27 |
| description | 10X Genomics- 102.100.100/40136 and 102.100.100/40138-processed |
| dna_conc_ng_ul | unknown |
| dna_extracted_by | Rahul Vivek Rane |
| dna_extraction_date | 2016-06-01 |
| dna_extraction_method | Qiagen genomic tip 20G |
| dna_treatment | >50kb size selection |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE) |
| facility_sample_id | AGRF |
| family | Peramelidae |
| file | AGRF_OMG_H5MY7DSXX_40136.tar.gz |
| flow_id | H5MY7DSXX |
| flowcell_id | H5MY7DSXX |
| folder_name | 20180810_AGRF_BPA_OMG_H5MY7DSXX |
| genome_data | yes |
| genome_dataset_ids | 40137 | 52592 | 52593 |
| genus | Perameles |
| habitat | Grassy woodland |
| identified_by | Michael Lynch |
| institution_name | University of Melbourne |
| library_comments | NA |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | AGRF |
| library_ng_ul | unknown |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_method | 10X Chromium |
| library_prepared_by | AGRF |
| library_status | Sequenced |
| library_type | genome linked read |
| life_stage | adult organism |
| location_text | Churchill Island |
| n_libraries_pooled | 1 |
| omg_project | Whole genomes |
| order | Peramelemorphia |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | limited degradation |
| sample_submission_date | 2018-08-13 |
| sequence_length | 150 PE |
| sequencing_facility | AGRF |
| sequencing_platform | NovaSeq 6000 |
| sex | female |
| software_version | mkfastq is 2.2.1 |
| source_population | Hamilton |
| species | gunnii |
| state_or_region | Victoria |
| subspecies_or_variant | victorian |
| taxon_id | 37737 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-670 |
| tissue_collection | Mammal |
| tissue_number | B50163 |
| tissue_preservation | ethanol | frozen |
| tissue_type | ear epithelium |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |
| voucher_or_tissue_number | B50163 |
| wild_captive | captive |