Fat-tailed dunnart, Whole genomes, genome linked read, liver
Dataset size is: 64.86 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2018-03-29 |
| Access Control Mode | date |
| Sequence Data Type | illumina-10x |
| access_rights | NA |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2017-04-28 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_processed/BPAOPS-121/ |
| birth_date | 2014-04-14 |
| bpa_dataset_id | 102.100.100/40125 |
| bpa_library_id | 102.100.100/52868 |
| bpa_sample_id | 102.100.100/40065 |
| bpa_work_order | 40001 |
| class | Mammalia |
| collection_date | 2016-04-28 |
| collection_method | unknown |
| collector | Stephen Frankenberg |
| collector_sample_id | NA |
| common_name | Fat-tailed dunnart |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Andrew Pask |
| data_custodian | Andy Pask |
| data_generated | 2017-04-28 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/dataset/bpa-omg-10x-processed-illumina-102_100_100_40065-hcgfnbcxy |
| date_of_transfer | 2017-03-29 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | 2014-04-28 |
| description | 10X Genomics- 102.100.100/40065 |
| dna_conc_ng_ul | 500.0 |
| dna_extracted_by | Stephen Frankenberg |
| dna_extraction_date | 2017-01-31 |
| dna_extraction_method | GeneElute Mammalian Genome DNA Miniprep Kit (Sigma) for initial lysis steps, but replacing the later column steps with phenol/chloroform extraction (to preserve high MW) |
| dna_treatment | >50kb size selection |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE) |
| facility_sample_id | unknown |
| family | Dasyuridae |
| file | 52868_HCGFNBCXY.tar |
| flow_id | HCGFNBCXY |
| flowcell_id | HCGFNBCXY |
| folder_name | HCGFNBCXY |
| genome_data | yes |
| genome_dataset_ids | 40125 | 52597 |
| genus | Sminthopsis |
| habitat | unknown |
| identified_by | unknown |
| institution_name | University of Melbourne |
| library_comments | NA |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | AGRF |
| library_ng_ul | unknown |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_method | 10X Chromium |
| library_prepared_by | AGRF |
| library_status | Data available |
| library_type | genome linked read |
| life_stage | adult organism |
| location_text | Captive colony |
| n_libraries_pooled | 1 |
| omg_project | Whole genomes |
| order | Dasyuromorphia |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | high molecular weight |
| sample_submission_date | 2017-03-29 |
| sequence_length | 150bp PE |
| sequencing_facility | AGRF |
| sequencing_platform | HiSeq 2500 RAPID |
| sex | female |
| software_version | RTA 1.18.66.3 |
| source_population | unknown |
| species | crassicaudata |
| state_or_region | Victoria |
| subspecies_or_variant | NA |
| taxon_id | 9301 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-121 |
| tissue_collection | unknown |
| tissue_number | Fy1 |
| tissue_preservation | liquid nitrogen |
| tissue_type | liver |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |
| voucher_or_tissue_number | Fy1 |
| wild_captive | captive |