Marine Microbes Metatranscriptome 102.100.100/58174
Dataset size is: 4.80 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-07-11 |
| Access Control Mode | date |
| Sequence Data Type | illumina-transcriptomics |
| am_environment | Marine |
| analysis_software_version | 1.8.2 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2018-04-19 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Host associated |
| coastal_id | CB_SL_130617_1_D|CB_SL_130617_1_R |
| collection_date | 2017-06-12T23:00:00 |
| data_generated | 2018-04-19 |
| data_type | fastQ |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-584/ |
| date_of_transfer | 2018-04-12 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MM |
| env_broad_scale | -9999 |
| env_local_scale | -9999 |
| env_medium | Sea water [ENVO_00002149] |
| facility | AGRF |
| folder_name | 20180412_AGRF_BPA_MM_CCADVANXX |
| funding_agency | -9999 |
| general_env_feature | -9999 |
| geo_loc_name | Australia:Middle Harbor [GAZ_00045323] |
| host_abundance (individuals/m2) | 100.0 |
| host_abundance_meth | meth_1.11 |
| host_associated_microbiome_zone | leaves |
| host_state | Healthy |
| host_type | Seagrass |
| insert_size_range | 480bp |
| lat_lon (decimal_degrees) | -33.826017 151.262931 |
| latitude (decimal_degrees) | -33.826017 |
| library_construction_protocol | TruSeq Total RNA |
| light_intensity_meadow (μmol/m2/s) | 529.0 |
| light_intensity_meadow_meth | -9999 |
| light_intensity_surface (μmol/m2/s) | 1322.0 |
| light_intensity_surface_meth | -9999 |
| longitude (decimal_degrees) | 151.262931 |
| nucl_acid_ext | meth_3.1.5 |
| omics | metatranscriptomics |
| pam_fluorometer | -9999.0 |
| read_length | 250bp |
| samp_collect_device | meth_1.11 |
| samp_mat_process | meth_1.11 |
| sample_attribution | -9999 |
| sample_database_file | AM_db_v4.2_202412051535.db |
| sample_extraction_id | 58174_1 |
| sample_id | 102.100.100/58174 |
| sample_metadata_ingest_date | 2024-06-21 15:28:42 |
| sample_metadata_ingest_file | coastalMM_Seagrass_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
| sample_site_location_description | Cobblers Beach |
| sample_submission_date | 2018-04-12 |
| sample_submitter | -9999 |
| sample_type | Seagrass |
| sequencer | HiSeq 2500 |
| source_mat_id | 102.100.100/58174 |
| specific_host | Zostera muelleri [NCBI:txid187284] |
| store_cond | meth_1.11 |
| ticket | BPAOPS-584 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/58174 |
| utc_date_sampled | 2017-06-12 |
| utc_time_sampled | 23:00:00 |