Marine Microbes Metatranscriptome 102.100.100/58148
Dataset size is: 6.00 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2018-07-11 |
Access Control Mode | date |
Sequence Data Type | illumina-transcriptomics |
am_environment | Marine |
analysis_software_version | 1.8.2 |
analytical_platform | HiSeq |
archive_ingestion_date | 2018-04-19 |
biotic_relationship | Host associated |
coastal_id | CB_SL_040417_2_D |
collection_date | 2017-04-04T09:00:00 |
data_generated | 2018-04-19 |
data_type | fastQ |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-584/ |
date_of_transfer | 2018-04-12 |
depth (m) | 2.0 |
depth_lower (m) | 2.0 |
depth_upper (m) | 2.0 |
description | MM |
env_medium | Sea water [ENVO_00002149] |
facility | AGRF |
folder_name | 20180412_AGRF_BPA_MM_CCADVANXX |
geo_loc_name | Australia:Sydney |
host_type | Seagrass |
insert_size_range | 480bp |
lat_lon (decimal_degrees) | -33.826017 151.262931 |
latitude (decimal_degrees) | -33.826017 |
library_construction_protocol | TruSeq Total RNA |
longitude (decimal_degrees) | 151.262931 |
omics | metatranscriptomics |
read_length | 250bp |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_extraction_id | 58148_1 |
sample_id | 102.100.100/58148 |
sample_metadata_ingest_date | 2021-04-23 11:19:12 |
sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
sample_metadata_update_history | AMsample_curate_textField_replace_commas_with_semicolon_UPDATE_xlsx; host_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; Host_NCBI_taxonomies_UPDATE_xlsx; |
sample_site_location_description | Cobbler Beach |
sample_submission_date | 2018-04-12 |
sample_type | Seagrass |
sequencer | HiSeq 2500 |
source_mat_id | 102.100.100/58148 |
specific_host | Zostera muelleri [NCBI:txid187284] |
ticket | BPAOPS-584 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/58148 |
utc_date_sampled | 2017-04-04 |
utc_time_sampled | 09:00:00 |