Marine Microbes Metatranscriptome 102.100.100/57518
Dataset size is: 4.99 GiB
This dataset is under an embargo to enable primary access by research partners.
If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
The embargo is for the following reason:
Unable to determine correct embargo period.
Data and Resources
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57518_1_PE_210bp_MM_AGRF_CC26CAN... Metadata Only FASTQ
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57518_1_PE_210bp_MM_AGRF_CC26CAN... Metadata Only FASTQ
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57518_1_PE_210bp_MM_AGRF_CC26CAN... Metadata Only FASTQ
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57518_1_PE_210bp_MM_AGRF_CC26CAN... Metadata Only FASTQ
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57518_1_PE_210bp_MM_AGRF_CC26CAN... Metadata Only FASTQ
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57518_1_PE_210bp_MM_AGRF_CC26CAN... Metadata Only FASTQ
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MM_metatranscriptomics_AGRF_CC26... Metadata Only MD5
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-transcriptomics |
| am_environment | Marine |
| analysis_software_version | bcl2fastq v2.20.0.422 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2017-12-21 |
| biotic_relationship | Host associated |
| coastal_id | BI_CC_150816_1 |
| collection_date | 2016-08-15T14:30:00 |
| contextual_data_submission_date | 2017-11-15 |
| data_generated | 2017-12-21 |
| data_type | Metatranscriptome |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metatranscriptome/agrf/BPAOPS-471/ |
| depth (m) | 10.0 |
| depth_lower (m) | 10.0 |
| depth_upper (m) | 10.0 |
| description | MM |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.3 Coastal water-intensive use |
| env_medium | Sea water [ENVO_00002149] |
| facility | AGRF |
| folder_name | 20170218_AGRF_BPA_MM_CC26CANXX |
| funding_agency | UNSW; Betty and Gordon Moore Foundation |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
| host_abundance (individuals/m2) | 1.0 |
| host_state | healthy |
| host_type | Sponge |
| insert_size_range | 210bp |
| lat_lon (decimal_degrees) | -33.992034 151.232282 |
| latitude (decimal_degrees) | -33.992034 |
| library_construction_protocol | Ribo-Zero Plant/Bacteria and TruSeq stranded mRNA |
| longitude (decimal_degrees) | 151.232282 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08953637 |
| omics | metatranscriptomics |
| read_length | 250bp |
| sample_attribution | UNSW; Betty and Gordon Moore Foundation |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_extraction_id | 57518_1 |
| sample_id | 102.100.100/57518 |
| sample_metadata_ingest_date | 2021-04-23 11:19:12 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | host_biotic_relationship_UPDATE_xlsx; AM_curate_null_geo_loc_name_UPDATE_xlsx; Host_NCBI_taxonomies_UPDATE_xlsx; ;Bare_island_metadata_ncbitaxid_JV_FullREPLACE_xlsx |
| sample_site_location_description | Bare Island |
| sample_submitter | Torsten Thomas [https://orcid.org/0000-0001-9557-3001]; Jessica Taylor |
| sample_type | Sponge |
| sequencer | HiSeq 2513 |
| source_mat_id | 102.100.100/57518 |
| specific_host | Cymbastela concentrica [NCBI:txid484451] |
| submitter | Jess Taylor |
| ticket | BPAOPS-471 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57518 |
| utc_date_sampled | 2016-08-15 |
| utc_time_sampled | 14:30:00 |
| work_order | 20019 |