Marine Microbes Metatranscriptome 102.100.100/36403
Dataset size is: 29.25 KiB
Data and Resources
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36403_1_PE_180bp_MM_AGRF_CD4E3AN... Metadata Only FASTQ
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36403_1_PE_180bp_MM_AGRF_CD4E3AN... Metadata Only FASTQ
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36403_1_PE_180bp_MM_AGRF_CD4E3AN... Metadata Only FASTQ
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36403_1_PE_180bp_MM_AGRF_CD4E3AN... Metadata Only FASTQ
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36403_1_PE_180bp_MM_AGRF_CD4E3AN... Metadata Only FASTQ
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36403_1_PE_180bp_MM_AGRF_CD4E3AN... Metadata Only FASTQ
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36403_1_PE_180bp_MM_AGRF_CD4E3AN... Metadata Only FASTQ
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36403_1_PE_180bp_MM_AGRF_CD4E3AN... Metadata Only FASTQ
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MM_metatranscriptomics_AGRF_checksum.md5 Metadata Only MD5
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2019-06-03 |
| Access Control Mode | date |
| Sequence Data Type | illumina-transcriptomics |
| am_environment | Marine |
| analysis_software_version | llumina bcl2fastq pipeline v 2.20.0.422 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2019-03-15 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Host associated |
| coastal_id | MI_Geoffrey Bay |
| collection_date | 2016-12-21T01:00:00 |
| data_generated | 2019-03-15 |
| data_type | Metatranscriptome |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metatranscriptome/agrf/BPAOPS-794/ |
| date_of_transfer | 2019-03-05 |
| depth (m) | 7.0 |
| depth_lower (m) | 7.0 |
| depth_upper (m) | 7.0 |
| description | MM |
| env_broad_scale | -9999 |
| env_local_scale | -9999 |
| env_medium | Sea water [ENVO_00002149] |
| facility | AGRF |
| folder_name | 20190305_AGRF_BPA_MM_CD4E3ANXX |
| funding_agency | -9999 |
| general_env_feature | -9999 |
| geo_loc_name | Australia:Great Barrier Reef Marine Park [GAZ_00049080] |
| host_abundance (individuals/m2) | -9999.0 |
| host_length (cm) | -9999.0 |
| host_species_variety | -9999 |
| host_state | -9999 |
| host_type | Sponge |
| insert_size_range | 201.0 |
| lat_lon (decimal_degrees) | -19.154109 146.6426 |
| latitude (decimal_degrees) | -19.154109 |
| library_construction_protocol | TruSeq strand RNA w/ Dual Ribo-Zero (plant and bacteria) |
| longitude (decimal_degrees) | 146.6426 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08953379 |
| nucl_acid_ext | meth_3.1.12 |
| omics | metatranscriptomics |
| read_length | 250bp |
| samp_collect_device | meth_1.12 |
| samp_mat_process | meth_1.12 |
| sample_attribution | -9999 |
| sample_database_file | AM_db_v4.2_202410080900.db |
| sample_extraction_id | 36403_1 |
| sample_id | 102.100.100/36403 |
| sample_metadata_ingest_date | 2024-06-21 15:32:54 |
| sample_metadata_ingest_file | coastalMM_Sponge_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
| sample_site_location_description | Magnetic Island:Geoffrey Bay |
| sample_submission_date | 2019-03-05 |
| sample_submitter | Bettina Glasl |
| sample_type | Sponge |
| sequencer | HiSeq 2500 |
| source_mat_id | 102.100.100/36403 |
| specific_host | Coscinoderma mathewsi [NCBI:txid2604249] |
| store_cond | meth_1.12 |
| ticket | BPAOPS-794 |
| touching_organisms | in contact with hard coral and macroalgae |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/36403 |
| utc_date_sampled | 2016-12-21 |
| utc_time_sampled | 01:00:00 |