Marine Microbes Metagenomics 102.100.100/57966
Dataset size is: 7.33 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-05-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| am_environment | Marine |
| analysis_software_version | 1.8.2 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2018-03-01 |
| biotic_relationship | Host associated |
| coastal_id | SH_ER_061016_3 |
| collection_date | 2016-10-06T10:30:00 |
| contextual_data_submission_date | 2017-09-05 |
| data_generated | 2018-03-01 |
| data_type | fastQ |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-524/ |
| date_of_transfer | 2018-02-22 |
| depth (m) | 5.0 |
| depth_lower (m) | 5.0 |
| depth_upper (m) | 5.0 |
| description | MM |
| env_medium | Sea water [ENVO_00002149] |
| facility | AGRF |
| folder_name | 20180222_AGRF_BPA_MM_HF5KWBCX2 |
| fouling | 10.0 |
| fouling_organisms | hyd |
| geo_loc_name | Australia:New South Wales |
| grazing (%) | 10.0 |
| host_abundance_seaweed_mean (individuals/m2) | 6.4 |
| host_state | Healthy |
| host_type | Seaweed |
| information | light out: PAR (from PAM) values out of the water; light in: at depth recorded. host state / condition: 4 categories: D=discoloured; Bl = bleached; Bo= blotches; F=fouled. Percentages % of thallus D;Bl;F or Grazed; 5 categories: 1=<10; 2=10-25; 3=25-50; 4=50-75; 5=>75. touching: 2 categories: Y=yes; N=no. Densities were quantified at each site at first sampling time; n=10 quadrats (50x50cm); adults and recruits recorded. PAM: maximum quantum yield. |
| insert_size_range | 480bp |
| lat_lon (decimal_degrees) | -34.07328 151.152925 |
| latitude (decimal_degrees) | -34.07328 |
| library_construction_protocol | Nextera DNA |
| longitude (decimal_degrees) | 151.152925 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08954331 |
| omics | metagenomics |
| read_length | 250bp |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_extraction_id | 57966_1 |
| sample_id | 102.100.100/57966 |
| sample_metadata_ingest_date | 2021-04-23 11:19:12 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | AMsample_curate_textField_replace_commas_with_semicolon_UPDATE_xlsx; host_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; Host_NCBI_taxonomies_UPDATE_xlsx; |
| sample_site_location_description | Salmon Haul |
| sample_submission_date | 2018-02-22 |
| sample_submitter | Jessica Taylor |
| sample_type | Seaweed |
| sequencer | HiSeq 2500 |
| source_mat_id | 102.100.100/57966 |
| specific_host | Ecklonia radiata [NCBI:txid309355] |
| submitter | Jessica Taylor |
| ticket | BPAOPS-524 |
| touching_organisms | ascidian; red corallines |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57966 |
| utc_date_sampled | 2016-10-06 |
| utc_time_sampled | 10:30:00 |
| work_order | 20016 |