Marine Microbes Metagenomics 102.100.100/57931
Dataset size is: 844.51 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2018-05-23 |
Access Control Mode | date |
Sequence Data Type | illumina-shortread |
am_environment | Marine |
analysis_software_version | 1.8.2 |
analytical_platform | HiSeq |
archive_ingestion_date | 2018-03-01 |
biotic_relationship | Host associated |
coastal_id | BI_ER_140616_3 |
collection_date | 2016-06-14T13:30:00 |
contextual_data_submission_date | 2017-09-05 |
data_generated | 2018-03-01 |
data_type | fastQ |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-523/ |
date_of_transfer | 2018-02-22 |
depth (m) | 5.0 |
depth_lower (m) | 5.0 |
depth_upper (m) | 5.0 |
description | MM |
env_broad_scale | 7 Other |
env_local_scale | 7.1.3 Coastal water-intensive use |
env_medium | Sea water [ENVO_00002149] |
facility | AGRF |
folder_name | 20180222_AGRF_BPA_MM_H7N2CBCX2 |
fouling | 5075.0 |
fouling_organisms | algae/bryozoans |
funding_agency | UNSW; Betty and Gordon Moore Foundation |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
grazing (%) | 2550.0 |
host_abundance (individuals/m2) | 70.0 |
host_abundance_seaweed_mean (individuals/m2) | 13.2 |
host_length (cm) | 70.0 |
host_state | 5075 |
host_type | Seaweed |
information | light out: PAR (from PAM) values out of the water; light in: at depth recorded. host state / condition: 4 categories: D=discoloured; Bl = bleached; Bo= blotches; F=fouled. Percentages % of thallus D;Bl;F or Grazed; 5 categories: 1=<10; 2=10-25; 3=25-50; 4=50-75; 5=>75. touching: 2 categories: Y=yes; N=no. Densities were quantified at each site at first sampling time; n=10 quadrats (50x50cm); adults and recruits recorded. PAM: maximum quantum yield. |
insert_size_range | 480bp |
lat_lon (decimal_degrees) | -33.990771 151.23245 |
latitude (decimal_degrees) | -33.990771 |
library_construction_protocol | Nextera DNA |
longitude (decimal_degrees) | 151.23245 |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_biosample_accession | SAMN08954296 |
omics | metagenomics |
pam_fluorometer | 793.0 |
read_length | 250bp |
sample_attribution | UNSW; Betty and Gordon Moore Foundation |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_extraction_id | 57931_1 |
sample_id | 102.100.100/57931 |
sample_metadata_ingest_date | 2021-04-23 11:19:12 |
sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
sample_metadata_update_history | AMsample_curate_textField_replace_commas_with_semicolon_UPDATE_xlsx; host_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; Host_NCBI_taxonomies_UPDATE_xlsx; ;Bare_island_metadata_ncbitaxid_JV_FullREPLACE_xlsx |
sample_site_location_description | Bare Island |
sample_submission_date | 2018-02-22 |
sample_submitter | Torsten Thomas [https://orcid.org/0000-0001-9557-3001]; Jessica Taylor |
sample_type | Seaweed |
sequencer | HiSeq 2500 |
source_mat_id | 102.100.100/57931 |
specific_host | Ecklonia radiata [NCBI:txid309355] |
submitter | Jessica Taylor |
ticket | BPAOPS-523 |
touching_organisms | kelp |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57931 |
utc_date_sampled | 2016-06-14 |
utc_time_sampled | 13:30:00 |
work_order | 20016 |