Marine Microbes Metagenomics 102.100.100/57911
Dataset size is: 8.43 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-05-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| am_environment | Marine |
| analysis_software_version | 1.8.2 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2018-03-01 |
| average_host_abundance (%) | -9999.0 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Host associated |
| bleaching (%) | -9999.0 |
| coastal_id | BI_ER_050416_2 |
| collection_date | 2016-04-05T04:00:00 |
| contextual_data_submission_date | 2017-09-05 |
| data_generated | 2018-03-01 |
| data_type | fastQ |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-522/ |
| date_of_transfer | 2018-02-22 |
| depth (m) | 3.0 |
| depth_lower (m) | 3.0 |
| depth_upper (m) | 3.0 |
| description | MM |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.3 Coastal water-intensive use |
| env_medium | Sea water [ENVO_00002149] |
| facility | AGRF |
| folder_name | 20180222_AGRF_BPA_MM_H7MYWBCX2 |
| fouling (%) | 10.0 |
| fouling_meth | meth_1.13 |
| fouling_organisms | bryozoan |
| funding_agency | UNSW; Betty and Gordon Moore Foundation |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ_00002797] |
| grazing (%) | 10.0 |
| grazing_meth | meth_1.13 |
| grazing_number (individuals/m2) | -9999.0 |
| host_abundance (individuals/m2) | 84.0 |
| host_abundance_meth | meth_1.13 |
| host_abundance_seaweed_mean (individuals/m2) | 13.2 |
| host_abundance_seaweed_mean_meth | meth_1.13 |
| host_length (cm) | 84.0 |
| host_length_meth | meth_1.13 |
| host_state | Healthy |
| host_type | Seaweed |
| information | light out: PAR (from PAM) values out of the water; light in: at depth recorded. host state / condition: 4 categories: D=discoloured; Bl = bleached; Bo= blotches; F=fouled. Percentages % of thallus D;Bl;F or Grazed; 5 categories: 1=<10; 2=10-25; 3=25-50; 4=50-75; 5=>75. touching: 2 categories: Y=yes; N=no. Densities were quantified at each site at first sampling time; n=10 quadrats (50x50cm); adults and recruits recorded. PAM: maximum quantum yield. |
| insert_size_range | 480bp |
| lat_lon (decimal_degrees) | -33.990771 151.23245 |
| latitude (decimal_degrees) | -33.990771 |
| library_construction_protocol | Nextera DNA |
| longitude (decimal_degrees) | 151.23245 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08954276 |
| nucl_acid_ext | meth_3.1.5 |
| omics | metagenomics |
| pam_fluorometer | 730.0 |
| pam_fluorometer_meth | meth_2.19 |
| read_length | 250bp |
| samp_collect_device | meth_1.13 |
| samp_mat_process | meth_1.13 |
| sample_attribution | UNSW; Betty and Gordon Moore Foundation |
| sample_database_file | AM_db_v4.2_202408091431.db |
| sample_extraction_id | 57911_1 |
| sample_id | 102.100.100/57911 |
| sample_metadata_ingest_date | 2024-06-21 15:30:54 |
| sample_metadata_ingest_file | coastalMM_Seaweed_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
| sample_site_location_description | Bare Island |
| sample_submission_date | 2018-02-22 |
| sample_submitter | Torsten Thomas [https://orcid.org/0000-0001-9557-3001]; Jessica Taylor |
| sample_type | Seaweed |
| sequencer | HiSeq 2500 |
| source_mat_id | 102.100.100/57911 |
| specific_host | Ecklonia radiata [NCBI:txid309355] |
| store_cond | meth_1.13 |
| submitter | Jessica Taylor |
| ticket | BPAOPS-522 |
| touching_organisms | kelp |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57911 |
| utc_date_sampled | 2016-04-05 |
| utc_time_sampled | 04:00:00 |
| work_order | 20016 |