Marine Microbes Metagenomics 102.100.100/36313
Dataset size is: 4.88 KiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2019-06-03 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| am_environment | Marine |
| ammonium (µmol/L) | 0.165678075 |
| analysis_software_version | llumina bcl2fastq pipeline v 2.20.0.422 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2019-03-15 |
| biotic_relationship | Free-living |
| chlorophyll_a (mg/m3) | 0.534264 |
| coastal_id | MagneticIsland_Geoffrey Bay |
| collection_date | 2016-10-10T10:00:00 |
| data_generated | 2019-03-15 |
| data_type | Metagenome |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-795/ |
| date_of_transfer | 2019-03-05 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MM |
| env_medium | Sea water [ENVO_00002149] |
| facility | AGRF |
| folder_name | 20190305_AGRF_BPA_MM_HWWLJBCX2 |
| geo_loc_name | Australia:Queensland:Magnetic Island:Geoffrey Bay |
| insert_size_range | 494.0 |
| lat_lon (decimal_degrees) | -19.154109 146.6426 |
| latitude (decimal_degrees) | -19.154109 |
| library_construction_protocol | Nextera XT |
| longitude (decimal_degrees) | 146.6426 |
| microbial_abundance (cells/mL) | 837900.0 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08953291 |
| nitrate_nitrite (µmol/L) | 0.02 |
| nitrite (µmol/L) | 0.02 |
| npic (mg/L) | 0.118286449 |
| npoc (mg/L) | 1.557234372 |
| omics | metagenomics |
| part_org_carb (µmol/L) | 12.87357189 |
| phosphate (µmol/L) | 0.076407786 |
| pn (µmol/L) | 1.750992272 |
| read_length | 250bp |
| salinity_lab (PSU) | 35.919325 |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_extraction_id | 36313_1 |
| sample_id | 102.100.100/36313 |
| sample_metadata_ingest_date | 2021-04-23 11:19:12 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; |
| sample_site_location_description | Geoffrey Bay |
| sample_submission_date | 2019-03-05 |
| sample_submitter | Bettina Glasl |
| sample_type | Coastal water |
| sequencer | HiSeq 2500 |
| sio2 (µmol/L) | 1.565331278 |
| source_mat_id | 102.100.100/36313 |
| temp (degC) | 26.42605 |
| ticket | BPAOPS-795 |
| tss (mg/L) | 1.715 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/36313 |
| utc_date_sampled | 2016-10-10 |
| utc_time_sampled | 10:00:00 |