Marine Microbes Metagenomics 102.100.100/35860

Deep Cast - Tasman, metagenome HiSeq

Dataset size is: 4.46 GiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2017-10-10
Access Control Mode date
Sequence Data Type illumina-shortread
am_environment Marine
analysis_software_version bcl2fastq 2.19.1.403
analytical_platform HiSeq
archive_ingestion_date 2017-07-17
bioplatforms_project Marine Microbes Project (MM)
biotic_relationship Free-living
collection_date 2016-09-08T21:32:16
contextual_data_submission_date 2017-04-26
data_generated 2017-07-17
data_type metagenome
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/ramaciotti/BPAOPS-230/
date_of_transfer 2017-07-12
depth (m) 4000.0
depth_lower (m) 4000.0
depth_upper (m) 4000.0
description MM
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
fluor (AU) 3.945918
folder_name 20170630_UNSW_BPA_MM_HTNFCBCXY
geo_loc_name Australia:Tasman Sea [GAZ_00008998]
insert_size_range 300-3000
lat_lon (decimal_degrees) -36.87897 152.56713
latitude (decimal_degrees) -36.87897
library_construction_protocol Nextera XT
longitude (decimal_degrees) 152.56713
ncbi_bioproject_accession PRJNA385736
ncbi_bioproject_accession_number PRJNA385736
ncbi_biosample_accession SAMN07483118
ncbi_biosample_accession_number SAMN07483118
nitrate_nitrite (μmol/L) 33.401
nitrite (μmol/L) 0.014
omics metagenomics
oxygen (μmol/L) 201.823
oxygen_ctd_wt (μmol/kg) 201.77824
phosphate (μmol/L) 2.282
pres_rel (dbar) 4001.2
read_length 250bp
salinity (PSU) 34.717845
salinity_lab (PSU) 34.717
sample_database_file AM_db_v4.2_202410080900.db
sample_extraction_id 35860_1
sample_id 102.100.100/35860
sample_metadata_ingest_date 2021-04-23 11:19:12
sample_metadata_ingest_file MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx
sample_metadata_update_history free_living_biotic_relationship_UPDATE_xlsx;
sample_site_location_description Deep Cast - Tasman
sample_submission_date 2017-07-12
sample_submitter Martin Ostrowski
sample_type Pelagic
sequencer HiSeq 2500
silicate (μmol/L) 119.006
source_mat_id 102.100.100/35860
submitter Martin Ostrowski
temp (degC) 1.181824
ticket BPAOPS-230
tot_depth_water_col (m) 4832.0
transmittance (%) 92.795178
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/35860
utc_date_sampled 2016-09-08
utc_time_sampled 21:32:16
voyage_code IN2016_v04
work_order 20008