Marine Microbes Metagenomics 102.100.100/34863
Dataset size is: 4.88 KiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2019-06-03 |
Access Control Mode | date |
Sequence Data Type | illumina-shortread |
alkalinity (µmol/kg) | 2283.0 |
am_environment | Marine |
ammonium (µmol/L) | 0.217463685 |
analysis_software_version | llumina bcl2fastq pipeline v 2.20.0.422 |
analytical_platform | HiSeq |
archive_ingestion_date | 2019-03-15 |
biotic_relationship | Free-living |
chlorophyll_a (mg/m3) | 0.3561768 |
coastal_id | MagneticIsland_Geoffrey Bay |
collection_date | 2016-06-08T12:00:00 |
data_generated | 2019-03-15 |
data_type | Metagenome |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-795/ |
date_of_transfer | 2019-03-05 |
depth (m) | 2.0 |
depth_lower (m) | 2.0 |
depth_upper (m) | 2.0 |
description | MM |
env_medium | Sea water [ENVO_00002149] |
facility | AGRF |
folder_name | 20190305_AGRF_BPA_MM_HWWLJBCX2 |
geo_loc_name | Australia:Queensland:Magnetic Island:Geoffrey Bay |
insert_size_range | 443.0 |
lat_lon (decimal_degrees) | -19.154109 146.6426 |
latitude (decimal_degrees) | -19.154109 |
library_construction_protocol | Nextera XT |
longitude (decimal_degrees) | 146.6426 |
microbial_abundance (cells/mL) | 672900.0 |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_biosample_accession | SAMN08219315 |
nitrate_nitrite (µmol/L) | 0.369389805 |
nitrite (µmol/L) | 0.023796617 |
npic (mg/L) | 0.104788758 |
npoc (mg/L) | 1.345453256 |
omics | metagenomics |
part_org_carb (µmol/L) | 12.62850403 |
phosphate (µmol/L) | 0.097781823 |
pn (µmol/L) | 1.50151911 |
read_length | 250bp |
salinity_lab (PSU) | 35.6875 |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_extraction_id | 34863_1 |
sample_id | 102.100.100/34863 |
sample_metadata_ingest_date | 2021-04-23 11:19:12 |
sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; |
sample_site_location_description | Geoffrey Bay |
sample_submission_date | 2019-03-05 |
sample_submitter | Bettina Glasl |
sample_type | Coastal water |
sequencer | HiSeq 2500 |
sio2 (µmol/L) | 3.381461896 |
source_mat_id | 102.100.100/34863 |
temp (degC) | 23.8387 |
ticket | BPAOPS-795 |
total_co2 (µmol/kg) | 1987.3 |
tss (mg/L) | 0.715 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34863 |
utc_date_sampled | 2016-06-08 |
utc_time_sampled | 12:00:00 |