Marine Microbes Metagenomics 102.100.100/34743

Yongala, metagenome HiSeq

Dataset size is: 5.70 GiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2017-10-10
Access Control Mode date
Sequence Data Type illumina-shortread
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2312.7
alkalinity_meth meth_2.2
allo (mg/m3) 0.003
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.011
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.09
ammonium_meth meth_2.2
analysis_software_version bcl2fastq 2.19.1.403
analytical_platform HiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2017-07-17
asta (mg/m3) 0.003
asta_meth meth_2.2
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Marine Microbes Project (MM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.021
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.256
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.016
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.029
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.024
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.5032
chlorophyll_ctd_meth meth_2.2
collection_date 2016-06-01T00:46:00
conductivity_aqueous (S/m) 5.485
conductivity_aqueous_meth meth_2.2
contextual_data_submission_date 2017-03-16
cphlide_a (mg/m3) 0.007
cphlide_a_meth meth_2.2
data_generated 2017-07-17
data_type metagenome
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/ramaciotti/BPAOPS-229/
date_of_transfer 2017-07-12
density (kg/m3) 1023.5753
density_meth meth_2.2
depth (m) 26.0
depth_lower (m) 26.0
depth_upper (m) 26.0
description MM
diadchr (mg/m3) 1e-10
diadchr_meth meth_2.2
diadino (mg/m3) 0.018
diadino_meth meth_2.2
diato (mg/m3) 0.003
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 0.01
dv_cphl_a_and_cphl_a (mg/m3) 0.266
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.016
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
folder_name 20170630_UNSW_BPA_MM_HTCGWBCXY
fuco (mg/m3) 0.041
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Great Barrier Reef Marine Park [GAZ_00049080]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.067
hex_fuco_meth meth_2.2
imos_site_code NRSYON
insert_size_range 300-3000
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -19.3085 147.6184
latitude (decimal_degrees) -19.3085
library_construction_protocol Nextera XT
longitude (decimal_degrees) 147.6184
lut (mg/m3) 1e-10
lut_meth meth_2.2
lyco (mg/m3) 1e-10
lyco_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
ncbi_bioproject_accession PRJNA385736
ncbi_bioproject_accession_number PRJNA385736
ncbi_biosample_accession SAMN07482755
ncbi_biosample_accession_number SAMN07482755
neo (mg/m3) 0.002
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code YON20160601_26
nrs_trip_code YON20160601
nucl_acid_ext meth_3.1.9
omics metagenomics
oxygen_ctd_vol (mL/L) 183.5136
oxygen_ctd_vol_meth meth_2.2
perid (mg/m3) 1e-10
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 1e-10
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 2251.0
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.002
pras_meth meth_2.2
prochlorococcus (cells/mL) 3069.5
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
read_length 250bp
salinity (PSU) 35.5621
salinity_lab (PSU) 35.571
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202410080900.db
sample_extraction_id 34743_1
sample_id 102.100.100/34743
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Yongala
sample_submission_date 2017-07-12
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 12.0
secchi_depth_meth meth_2.2
sequencer HiSeq 2500
silicate (μmol/L) 1.4
silicate_meth meth_2.2
source_mat_id 102.100.100/34743
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 37321.0
synechococcus_meth meth_2.2int
temp (degC) 25.9535
temp_meth meth_2.2
ticket BPAOPS-229
total_co2 (μmol/kg) 1990.25
total_co2_meth meth_2.2
turbidity (NTU) 0.1153
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34743
utc_date_sampled 2016-06-01
utc_time_sampled 00:46:00
viola (mg/m3) 0.002
viola_meth meth_2.2
work_order 20008
zea (mg/m3) 0.025
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 26.3864
zooplankton_biomass_meth meth_2.2int