Marine Microbes Metagenomics 102.100.100/34300
Dataset size is: 1.00 GiB
Data and Resources
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34300_1_PE_680bp_MM_AGRF_H3J7YBC... Metadata Only FASTQ
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34300_1_PE_680bp_MM_AGRF_H3J7YBC... Metadata Only FASTQ
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MM_NGS_AGRF_H3J7YBCXY_checksums.md5 Metadata Only MD5
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MM_NGS_AGRF_H3KWWBCXY_checksums.md5 Metadata Only MD5
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MM_NGS_AGRF_H3KWTBCXY_checksums.md5 Metadata Only MD5
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MM_NGS_AGRF_H3L2JBCXY_checksums.md5 Metadata Only MD5
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2017-01-18 |
Access Control Mode | date |
Sequence Data Type | illumina-shortread |
am_environment | Marine |
ammonium (μmol/L) | 0.037 |
analysis_software_version | 1.8.2 |
analytical_platform | HiSeq |
archive_ingestion_date | 2016-10-20 |
bioplatforms_project | Marine Microbes Project (MM) |
biotic_relationship | Free-living |
collection_date | 2015-12-04T22:39:44 |
contextual_data_submission_date | 2016-07-15 |
data_generated | 2016-10-20 |
data_type | fastQ |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-40/ |
date_of_transfer | 2016-10-20 |
depth (m) | 76.0 |
depth_lower (m) | 76.0 |
depth_upper (m) | 76.0 |
description | MM |
env_medium | Sea water [ENVO_00002149] |
facility | AGRF |
folder_name | 20161020_AGRF_BPA_MM_H3L2JBCXY |
geo_loc_name | Australia:Great Australian Bight [GAZ_00045604] |
insert_size_range | 680bp |
lat_lon (decimal_degrees) | -35.04845 134.0896 |
latitude (decimal_degrees) | -35.04845 |
library_construction_protocol | Nextera XT |
longitude (decimal_degrees) | 134.0896 |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_bioproject_accession_number | PRJNA385736 |
ncbi_biosample_accession | SAMN07482701 |
ncbi_biosample_accession_number | SAMN07482701 |
nitrate_nitrite (μmol/L) | 0.478 |
nitrite (μmol/L) | 0.036 |
omics | metagenomics |
oxygen_ctd_wt (μmol/kg) | 251.8 |
phosphate (μmol/L) | 0.176 |
pres_rel (dbar) | 75.5 |
read_length | 250bp |
salinity (PSU) | 35.567 |
sample_database_file | AM_db_v4.2_202408091431.db |
sample_extraction_id | 34300_1 |
sample_id | 102.100.100/34300 |
sample_metadata_ingest_date | 2021-04-23 11:19:12 |
sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; |
sample_site_location_description | T5-400 |
sample_submission_date | 2016-10-20 |
sample_submitter | Jodie van de Kamp |
sample_type | Pelagic |
sequencer | HiSeq 2500 |
silicate (μmol/L) | 1.226 |
source_mat_id | 102.100.100/34300 |
submitter | Jodie van de Kamp |
temp (degC) | 14.957 |
ticket | BPAOPS-40 |
tot_depth_water_col (m) | 410.0 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34300 |
utc_date_sampled | 2015-12-04 |
utc_time_sampled | 22:39:44 |
voyage_code | IN2015_C02 |
work_order | 9 |