Marine Microbes Metagenomics 102.100.100/34279
Dataset size is: 565.78 MiB
Data and Resources
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34279_1_PE_680bp_MM_AGRF_H3J7YBC... Metadata Only FASTQ
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34279_1_PE_680bp_MM_AGRF_H3J7YBC... Metadata Only FASTQ
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MM_NGS_AGRF_H3L2JBCXY_checksums.md5 Metadata Only MD5
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MM_NGS_AGRF_H3KWTBCXY_checksums.md5 Metadata Only MD5
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MM_NGS_AGRF_H3KWWBCXY_checksums.md5 Metadata Only MD5
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MM_NGS_AGRF_H3J7YBCXY_checksums.md5 Metadata Only MD5
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2017-01-18 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| Related Data | doi:10.25953/z3tc-a185 |
| absorbance_260_280_ratio_submitter | 1.91 |
| absorbance_260_280_ratio_submitter_meth | meth_3.3.1 |
| alkalinity (μmol/kg) | 2337.18 |
| alkalinity_meth | meth_2.2 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.02 |
| ammonium_meth | meth_2.2 |
| analysis_software_version | 1.8.2 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2016-10-20 |
| bioplatforms_dataset_id | 102.100.100/401949 |
| bioplatforms_project | Marine Microbes Project (MM) |
| bioplatforms_project_code | AM_NRS |
| biotic_relationship | Free-living |
| chlorophyll_ctd (mg/m3) | 0.2085 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2016-01-20T00:30:00 |
| conductivity_aqueous (S/m) | 5.0016 |
| conductivity_aqueous_meth | meth_2.2 |
| contextual_data_submission_date | 2016-07-15 |
| data_generated | 2016-10-20 |
| data_type | fastQ |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401949 |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-40/ |
| date_of_transfer | 2016-10-20 |
| density (kg/m3) | 1025.1101 |
| density_meth | meth_2.2 |
| depth (m) | 50.0 |
| depth_lower (m) | 50.0 |
| depth_upper (m) | 50.0 |
| description | MM |
| dna_concentration_submitter (ng/μL) | 12.45 |
| dna_concentration_submitter_meth | meth_3.3.1 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| facility | AGRF |
| folder_name | 20161020_AGRF_BPA_MM_H3L2JBCXY |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Moreton Bay Marine Park [GAZ_00088305] |
| imos_site_code | NRSNSI |
| insert_size_range | 680bp |
| lat_lon (decimal_degrees) | -27.345 153.562 |
| latitude (decimal_degrees) | -27.345 |
| library_construction_protocol | Nextera XT |
| longitude (decimal_degrees) | 153.562 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| ncbi_biosample_accession | SAMN07482680 |
| ncbi_biosample_accession_number | SAMN07482680 |
| nitrate (μmol/L) | 5.8 |
| nitrate_meth | meth_2.2 |
| nrs_sample_code | NSI20160120_50 |
| nrs_trip_code | NSI20160120 |
| nucl_acid_ext | meth_3.1.9 |
| omics | metagenomics |
| oxygen_ctd_vol (mL/L) | 160.781 |
| oxygen_ctd_vol_meth | meth_2.2 |
| phosphate (μmol/L) | 0.49 |
| phosphate_meth | meth_2.2 |
| read_length | 250bp |
| salinity (PSU) | 35.6519 |
| salinity_lab (PSU) | 35.645 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202410080900.db |
| sample_extraction_id | 34279_1 |
| sample_id | 102.100.100/34279 |
| sample_integrity_warnings | WARNING: Storage or transport conditions compromised |
| sample_metadata_ingest_date | 2022-11-29 17:13:14 |
| sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
| sample_site_location_description | North Stradbroke Island |
| sample_submission_date | 2016-10-20 |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| sample_volume_notes | Other - not recorded in field log sheets [assume 2 L as per protocol] |
| secchi_depth (m) | 28.5 |
| secchi_depth_meth | meth_2.2 |
| sequencer | HiSeq 2500 |
| silicate (μmol/L) | 1.9 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/34279 |
| store_cond | meth_1.4 |
| submitter | Jodie van de Kamp |
| temp (degC) | 21.237 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-40 |
| total_co2 (μmol/kg) | 2081.96 |
| total_co2_meth | meth_2.2 |
| turbidity (NTU) | 0.3826 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34279 |
| utc_date_sampled | 2016-01-20 |
| utc_time_sampled | 00:30:00 |
| work_order | 9 |
| zooplankton_biomass (mg/m3) | 10.8083 |
| zooplankton_biomass_meth | meth_2.2int |