Marine Microbes Metagenomics 102.100.100/34249
Dataset size is: 3.85 GiB
Data and Resources
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34249_1_PE_680bp_MM_AGRF_H3J7YBC... Metadata Only FASTQ
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34249_1_PE_680bp_MM_AGRF_H3J7YBC... Metadata Only FASTQ
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MM_NGS_AGRF_H3KWWBCXY_checksums.md5 Metadata Only MD5
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MM_NGS_AGRF_H3J7YBCXY_checksums.md5 Metadata Only MD5
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MM_NGS_AGRF_H3L2JBCXY_checksums.md5 Metadata Only MD5
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MM_NGS_AGRF_H3KWTBCXY_checksums.md5 Metadata Only MD5
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2017-01-18 |
Access Control Mode | date |
Sequence Data Type | illumina-shortread |
Related Data | doi:10.25953/z3tc-a185 |
absorbance_260_280_ratio_submitter | 2.03 |
absorbance_260_280_ratio_submitter_meth | meth_3.3.1 |
alkalinity (μmol/kg) | 2333.59 |
alkalinity_meth | meth_2.2 |
am_environment | Marine |
ammonium (μmol/L) | 1e-10 |
ammonium_meth | meth_2.2 |
analysis_software_version | 1.8.2 |
analytical_platform | HiSeq |
archive_ingestion_date | 2016-10-20 |
bioplatforms_dataset_id | 102.100.100/401949 |
bioplatforms_project | Marine Microbes Project (MM) |
bioplatforms_project_code | AM_NRS |
biotic_relationship | Free-living |
chlorophyll_ctd (mg/m3) | 0.5699 |
chlorophyll_ctd_meth | meth_2.2 |
collection_date | 2016-04-12T00:45:00 |
conductivity_aqueous (S/m) | 5.0055 |
conductivity_aqueous_meth | meth_2.2 |
contextual_data_submission_date | 2016-07-15 |
data_generated | 2016-10-20 |
data_type | fastQ |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_id | 102.100.100/401949 |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-40/ |
date_of_transfer | 2016-10-20 |
density (kg/m3) | 1024.9427 |
density_meth | meth_2.2 |
depth (m) | 50.0 |
depth_lower (m) | 50.0 |
depth_upper (m) | 50.0 |
description | MM |
dna_concentration_submitter (ng/μL) | 18.72 |
dna_concentration_submitter_meth | meth_3.3.1 |
env_broad_scale | 7 Other |
env_local_scale | 7.2.1 Open ocean water-conservation |
env_medium | Sea water [ENVO_00002149] |
facility | AGRF |
folder_name | 20161020_AGRF_BPA_MM_H3L2JBCXY |
funding_agency | IMOS|CSIRO |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Moreton Bay Marine Park [GAZ_00088305] |
imos_site_code | NRSNSI |
insert_size_range | 680bp |
lat_lon (decimal_degrees) | -27.345 153.562 |
latitude (decimal_degrees) | -27.345 |
library_construction_protocol | Nextera XT |
longitude (decimal_degrees) | 153.562 |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_bioproject_accession_number | PRJNA385736 |
ncbi_biosample_accession | SAMN07483260 |
ncbi_biosample_accession_number | SAMN07483260 |
nitrate (μmol/L) | 3.7 |
nitrate_meth | meth_2.2 |
nitrite (μmol/L) | 1e-10 |
nitrite_meth | meth_2.2 |
nrs_sample_code | NSI20160412_50 |
nrs_trip_code | NSI20160412 |
nucl_acid_ext | meth_3.1.9 |
omics | metagenomics |
oxygen_ctd_vol (mL/L) | -52.1988 |
oxygen_ctd_vol_meth | meth_2.2 |
phosphate (μmol/L) | 0.35 |
phosphate_meth | meth_2.2 |
picoeukaryotes (cells/mL) | 4858.0 |
picoeukaryotes_meth | meth_2.2int |
prochlorococcus (cells/mL) | 26018.5 |
prochlorococcus_meth | meth_2.2int |
read_length | 250bp |
salinity (PSU) | 35.6193 |
salinity_lab (PSU) | 35.61 |
salinity_lab_meth | meth_2.2 |
salinity_meth | meth_2.2 |
samp_collect_device | meth_1.4 |
samp_mat_process | meth_1.4 |
samp_size (L) | 2.0 |
samp_vol_we_dna_ext (L) | 2.0 |
sample_attribution | IMOS|CSIRO |
sample_database_file | AM_db_v4.2_202408091431.db |
sample_extraction_id | 34249_1 |
sample_id | 102.100.100/34249 |
sample_metadata_ingest_date | 2022-11-29 17:13:14 |
sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
sample_site_location_description | North Stradbroke Island |
sample_submission_date | 2016-10-20 |
sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
sample_type | Pelagic |
secchi_depth (m) | 16.0 |
secchi_depth_meth | meth_2.2 |
sequencer | HiSeq 2500 |
silicate (μmol/L) | 1.4 |
silicate_meth | meth_2.2 |
source_mat_id | 102.100.100/34249 |
store_cond | meth_1.4 |
submitter | Jodie van de Kamp |
synechococcus (cells/mL) | 10003.5 |
synechococcus_meth | meth_2.2int |
temp (degC) | 21.3137 |
temp_meth | meth_2.2 |
ticket | BPAOPS-40 |
total_co2 (μmol/kg) | 2052.9 |
total_co2_meth | meth_2.2 |
turbidity (NTU) | 0.4528 |
turbidity_meth | meth_2.2 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34249 |
utc_date_sampled | 2016-04-12 |
utc_time_sampled | 00:45:00 |
work_order | 9 |
zooplankton_biomass (mg/m3) | 7.3813 |
zooplankton_biomass_meth | meth_2.2int |