Marine Microbes Metagenomics 102.100.100/34157

Maria Island, fastQ HiSeq

Dataset size is: 2.41 GiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2017-01-18
Access Control Mode date
Sequence Data Type illumina-shortread
Related Data doi:10.25953/z3tc-a185
absorbance_260_280_ratio_submitter 1.73
absorbance_260_280_ratio_submitter_meth meth_3.3.1
alkalinity (μmol/kg) 2337.53
alkalinity_meth meth_2.2
allo (mg/m3) 0.008
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.016
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.01
ammonium_meth meth_2.2
analysis_software_version 1.8.2
analytical_platform HiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2016-10-20
asta (mg/m3) 1e-10
asta_meth meth_2.2
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Marine Microbes Project (MM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.024
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.224
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.034
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.038
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.033
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.0426
chlorophyll_ctd_meth meth_2.2
collection_date 2016-03-21T23:11:00
conductivity_aqueous (S/m) 4.8513
conductivity_aqueous_meth meth_2.2
contextual_data_submission_date 2016-07-15
cphlide_a (mg/m3) 0.048
cphlide_a_meth meth_2.2
data_generated 2016-10-20
data_type fastQ
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-40/
date_of_transfer 2016-10-20
density (kg/m3) 1025.3151
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MM
diadchr (mg/m3) 1e-10
diadchr_meth meth_2.2
diadino (mg/m3) 0.025
diadino_meth meth_2.2
diato (mg/m3) 0.003
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration_submitter (ng/μL) 15.31
dna_concentration_submitter_meth meth_3.3.1
dv_cphl_a (mg/m3) 0.039
dv_cphl_a_and_cphl_a (mg/m3) 0.263
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.034
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility AGRF
folder_name 20161020_AGRF_BPA_MM_H3L2JBCXY
fuco (mg/m3) 0.035
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ_00143737]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.059
hex_fuco_meth meth_2.2
imos_site_code NRSMAI
insert_size_range 680bp
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
library_construction_protocol Nextera XT
longitude (decimal_degrees) 148.2333
lut (mg/m3) 1e-10
lut_meth meth_2.2
lyco (mg/m3) 1e-10
lyco_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
ncbi_bioproject_accession PRJNA385736
ncbi_bioproject_accession_number PRJNA385736
ncbi_biosample_accession SAMN07483168
ncbi_biosample_accession_number SAMN07483168
neo (mg/m3) 0.004
neo_meth meth_2.2
nitrate (μmol/L) 0.1
nitrate_meth meth_2.2
nrs_sample_code MAI20160321_0
nrs_trip_code MAI20160321
nucl_acid_ext meth_3.1.9
omics metagenomics
oxygen (μmol/L) 231.2
oxygen_ctd_vol (mL/L) -61.8818
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
perid (mg/m3) 0.014
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.05
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 5655.0
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.006
pras_meth meth_2.2
prochlorococcus (cells/mL) 14255.0
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
read_length 250bp
salinity (PSU) 35.6492
salinity_lab (PSU) 35.641
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202410080900.db
sample_extraction_id 34157_1
sample_id 102.100.100/34157
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submission_date 2016-10-20
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 23.0
secchi_depth_meth meth_2.2
sequencer HiSeq 2500
silicate (μmol/L) 0.2
silicate_meth meth_2.2
source_mat_id 102.100.100/34157
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 22304.5
synechococcus_meth meth_2.2int
temp (degC) 19.8089
temp_meth meth_2.2
ticket BPAOPS-40
total_co2 (μmol/kg) 2042.69
total_co2_meth meth_2.2
turbidity (NTU) 0.5426
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34157
utc_date_sampled 2016-03-21
utc_time_sampled 23:11:00
viola (mg/m3) 0.005
viola_meth meth_2.2
work_order 9
zea (mg/m3) 0.047
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 6.0825
zooplankton_biomass_meth meth_2.2int