Marine Microbes Metagenomics 102.100.100/21644
Dataset size is: 9.56 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2015-09-30 |
Access Control Mode | date |
Sequence Data Type | illumina-shortread |
Related Data | doi:10.25953/z3tc-a185 |
absorbance_260_280_ratio_submitter | 2.04 |
absorbance_260_280_ratio_submitter_meth | meth_3.3.1 |
alkalinity (µmol/kg) | 2336.69 |
alkalinity_meth | meth_2.2 |
am_environment | Marine |
ammonium (µmol/L) | 0.06 |
ammonium_meth | meth_2.2 |
analysis_software_version | 1.8.2 |
analytical_platform | HiSeq |
archive_ingestion_date | 2015-07-02 |
biotic_relationship | Free-living |
chlorophyll_ctd (mg/m3) | 0.2121 |
chlorophyll_ctd_meth | meth_2.2 |
collection_date | 2013-08-07T01:30:00 |
conductivity_aqueous (S/m) | 4.1681 |
conductivity_aqueous_meth | meth_2.2 |
contextual_data_submission_date | 2015-09-30 |
data_generated | 2015-07-02 |
data_type | fastQ |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BRLOPS-663/ |
date_of_transfer | 2015-07-02 |
density (kg/m3) | 1026.6661 |
density_meth | meth_2.2 |
depth (m) | 0.0 |
depth_lower (m) | 0.0 |
depth_upper (m) | 0.0 |
description | MM |
dna_concentration_submitter (ng/µL) | 6.372 |
dna_concentration_submitter_meth | meth_3.3.1 |
env_broad_scale | 7 Other |
env_local_scale | 7.2.1 Open ocean water-conservation |
env_medium | Sea water [ENVO_00002149] |
facility | AGRF |
folder_name | 20150702_AGRF_BPA_MM_H3VJJBCXX |
funding_agency | IMOS|CSIRO |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737] |
imos_site_code | NRSMAI |
insert_size_range | 680bp |
lat_lon (decimal_degrees) | -42.5967 148.2333 |
latitude (decimal_degrees) | -42.5967 |
library_construction_protocol | Nextera XT |
longitude (decimal_degrees) | 148.2333 |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_biosample_accession | SAMN07483520 |
nitrate (µmol/L) | 2.0 |
nitrate_meth | meth_2.2 |
nrs_sample_code | MAI20130807_0 |
nrs_trip_code | MAI20130807 |
nucl_acid_ext | meth_3.1.9 |
omics | metagenomics |
oxygen (µmol/L) | 260.0 |
oxygen_ctd_vol (mL/L) | 200.9803 |
oxygen_ctd_vol_meth | meth_2.2 |
oxygen_meth | meth_2.2 |
phosphate (µmol/L) | 0.24 |
phosphate_meth | meth_2.2 |
picoeukaryotes (cells/mL) | 5009.0 |
picoeukaryotes_meth | meth_2.2int |
prochlorococcus (cells/mL) | 1911.5 |
prochlorococcus_meth | meth_2.2int |
read_length | 250bp |
salinity (PSU) | 35.4174 |
salinity_lab (PSU) | 35.424 |
salinity_lab_meth | meth_2.2 |
salinity_meth | meth_2.2 |
samp_collect_device | meth_1.4 |
samp_mat_process | meth_1.4 |
samp_size (L) | 2.0 |
samp_vol_we_dna_ext (L) | 2.0 |
sample_attribution | IMOS|CSIRO |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_extraction_id | 21644 |
sample_id | 102.100.100/21644 |
sample_metadata_ingest_date | 2022-11-29 17:13:14 |
sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
sample_site_location_description | Maria Island |
sample_submission_date | 2015-07-02 |
sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
sample_type | Pelagic |
sample_volume_notes | Other - not recorded in field log sheets [assume 2 L as per protocol] |
secchi_depth (m) | 18.0 |
secchi_depth_meth | meth_2.2 |
sequencer | HiSeq 2500 |
silicate (µmol/L) | 0.7 |
silicate_meth | meth_2.2 |
source_mat_id | 102.100.100/21644 |
store_cond | meth_1.4 |
submitter | Jodie van de Kamp |
synechococcus (cells/mL) | 6993.5 |
synechococcus_meth | meth_2.2int |
temp (degC) | 13.2844 |
temp_meth | meth_2.2 |
ticket | BRLOPS-663 |
total_co2 (µmol/kg) | 2096.14 |
total_co2_meth | meth_2.2 |
tss (mg/L) | 0.7 |
tss_meth | meth_2.2int |
turbidity (NTU_or_FTU) | 0.319 |
turbidity_meth | meth_2.2 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/21644 |
utc_date_sampled | 2013-08-07 |
utc_time_sampled | 01:30:00 |
work_order | 2 |
zooplankton_biomass (mg/m3) | 2.8143 |
zooplankton_biomass_meth | meth_2.2int |