Marine Microbes Amplicons A16S 102.100.100/36330 BH4ML
Dataset size is: 43.92 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-03-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| ammonium (µmol/L) | 0.3289509 |
| amplicon | A16S |
| analysis_software_version | 2.5.1.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2017-12-01 |
| biotic_relationship | Free-living |
| chlorophyll_a (mg/m3) | 0.374256 |
| coastal_id | MagneticIsland_Geoffrey Bay |
| collection_date | 2017-03-18T10:00:00 |
| comments | 36330_1_A16s_UNSW_GCTCATGA_TATCCTCT_BH4ML |
| contextual_data_submission_date | 2017-07-13 |
| data_generated | 2017-12-01 |
| data_type | A16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/a16s/ramaciotti/BPAOPS-409/ |
| date_of_transfer | 2017-12-01 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MM |
| dilution_used | neat |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | BH4ML |
| folder_name | 20171201_UNSW_BPA_MM_BH4ML |
| geo_loc_name | Australia:Queensland:Magnetic Island:Geoffrey Bay |
| lat_lon (decimal_degrees) | -19.154109 146.6426 |
| latitude (decimal_degrees) | -19.154109 |
| longitude (decimal_degrees) | 146.6426 |
| microbial_abundance (cells/mL) | 763800.0 |
| mm_amplicon_linkage | BH4ML |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08953308 |
| nitrate_nitrite (µmol/L) | 0.5565159 |
| nitrite (µmol/L) | 0.0273691 |
| npic (mg/L) | 0.110662912 |
| npoc (mg/L) | 1.122368481 |
| omics | Genomics |
| part_org_carb (µmol/L) | 12.69663439 |
| pass_fail | P |
| phosphate (µmol/L) | 1.1367704 |
| pn (µmol/L) | 1.759385306 |
| read_length | 300bp |
| reads | 121566.0 |
| salinity_lab (PSU) | 35.34375 |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_extraction_id | 36330_1 |
| sample_id | 102.100.100/36330 |
| sample_metadata_ingest_date | 2021-04-23 11:19:12 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; |
| sample_site_location_description | Geoffrey Bay |
| sample_submission_date | 2017-12-01 |
| sample_submitter | Bettina Glasl |
| sample_type | Coastal water |
| sio2 (µmol/L) | 3.4584605 |
| source_mat_id | 102.100.100/36330 |
| submitter | Bettina Glasl |
| target | A16S |
| temp (degC) | 30.90365 |
| ticket | BPAOPS-409 |
| tss (mg/L) | 0.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/36330 |
| utc_date_sampled | 2017-03-18 |
| utc_time_sampled | 10:00:00 |
| work_order | 20009 |