Marine Microbes Amplicons A16S 102.100.100/34273 ATN3N

Maria Island, A16S MiSeq

Dataset size is: 42.22 MiB

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2016-11-23
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
absorbance_260_280_ratio_submitter 2.08
absorbance_260_280_ratio_submitter_meth meth_3.3.1
alkalinity (μmol/kg) 2337.17
alkalinity_meth meth_2.2
allo (mg/m3) 0.008
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.008
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.42
ammonium_meth meth_2.2
amplicon A16S
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2016-08-30
asta (mg/m3) 1e-10
asta_meth meth_2.2
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Marine Microbes Project (MM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.013
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.203
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.044
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.024
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.013
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.1254
chlorophyll_ctd_meth meth_2.2
collection_date 2016-05-30T23:45:00
comments 34273_1_A16S_UNSW_CGTACTAG_AAGGAGTA_ATN3N
conductivity_aqueous (S/m) 4.2835
conductivity_aqueous_meth meth_2.2
contextual_data_submission_date 2016-07-19
cphlide_a (mg/m3) 0.018
cphlide_a_meth meth_2.2
data_generated 2016-08-30
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/a16s/ramaciotti/BRLOPS-851/
date_of_transfer 2016-08-25
density (kg/m3) 1026.9753
density_meth meth_2.2
depth (m) 85.0
depth_lower (m) 85.0
depth_upper (m) 85.0
description MM
diadchr (mg/m3) 1e-10
diadchr_meth meth_2.2
diadino (mg/m3) 0.005
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used Neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration_submitter (ng/μL) 16.27
dna_concentration_submitter_meth meth_3.3.1
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.203
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.044
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
flow_id ATN3N
folder_name 20160825_UNSW_BPA_MM_ATN3N
fuco (mg/m3) 0.043
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ_00143737]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.025
hex_fuco_meth meth_2.2
imos_site_code NRSMAI
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
lut (mg/m3) 1e-10
lut_meth meth_2.2
lyco (mg/m3) 1e-10
lyco_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
mm_amplicon_linkage ATN3N
ncbi_bioproject_accession PRJNA385736
ncbi_bioproject_accession_number PRJNA385736
ncbi_biosample_accession SAMN07483284
ncbi_biosample_accession_number SAMN07483284
neo (mg/m3) 0.006
neo_meth meth_2.2
nitrate (μmol/L) 2.0
nitrate_meth meth_2.2
nitrite (μmol/L) 0.41
nitrite_meth meth_2.2
nrs_sample_code MAI20160530_85
nrs_trip_code MAI20160530
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 252.3
oxygen_ctd_vol (mL/L) 241.483
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 1e-10
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.32
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 4660.0
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.017
pras_meth meth_2.2
prochlorococcus (cells/mL) 4015.0
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
read_length 300bp
reads 112458.0
salinity (PSU) 35.5883
salinity_lab (PSU) 35.55
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202408091431.db
sample_extraction_id 34273_1
sample_id 102.100.100/34273
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submission_date 2016-08-25
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 20.0
secchi_depth_meth meth_2.2
silicate (μmol/L) 1.7
silicate_meth meth_2.2
source_mat_id 102.100.100/34273
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 10379.5
synechococcus_meth meth_2.2int
target A16S
temp (degC) 14.2313
temp_meth meth_2.2
ticket BRLOPS-851
total_co2 (μmol/kg) 2097.28
total_co2_meth meth_2.2
turbidity (NTU) 0.6499
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34273
utc_date_sampled 2016-05-30
utc_time_sampled 23:45:00
viola (mg/m3) 0.004
viola_meth meth_2.2
work_order 8
zea (mg/m3) 0.002
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 3.7862
zooplankton_biomass_meth meth_2.2int