Marine Microbes Amplicons 18S 102.100.100/58434 C59W3
Dataset size is: 20.49 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2019-02-20 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
alkalinity (μmol/kg) | 2559.527 |
alkalinity_meth | -9999 |
am_environment | Marine |
ammonium (μmol/L) | 2.628 |
ammonium_meth | -9999 |
amplicon | 18S |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
archive_ingestion_date | 2018-11-23 |
bioplatforms_project | Marine Microbes Project (MM) |
biotic_relationship | Free-living |
chlorophyll_a (mg/m3) | 1.626 |
chlorophyll_a_meth | -9999 |
coastal_id | CB_PL_031116_3 |
collection_date | 2016-11-02T21:30:00 |
comments | 58434_1_18S_UNSW_TAAGGCGA_CTAAGCCT_C59W3 |
conductivity_aqueous (S/m) | 4.5 |
conductivity_aqueous_meth | -9999 |
data_generated | 2018-11-23 |
data_type | 18S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/18s/ramaciotti/BPAOPS-752/ |
date_of_transfer | 2018-11-22 |
depth (m) | 1.0 |
depth_lower (m) | 1.0 |
depth_upper (m) | 1.0 |
description | MM |
dilution_used | neat |
env_broad_scale | -9999 |
env_local_scale | -9999 |
env_medium | Sea water [ENVO_00002149] |
facility | RAMACIOTTI |
flow_id | C59W3 |
folder_name | 20181122_UNSW_BPA_MM_C59W3 |
funding_agency | -9999 |
general_env_feature | -9999 |
geo_loc_name | Australia:Middle Harbor [GAZ_00045323] |
lat_lon (decimal_degrees) | -33.825633 151.263307 |
latitude (decimal_degrees) | -33.825633 |
light_intensity (lux) | -9999.0 |
longitude (decimal_degrees) | 151.263307 |
microbial_abundance (cells/mL) | -9999.0 |
mm_amplicon_linkage | C59W3 |
nitrate (μmol/L) | 0.437 |
nitrate_meth | -9999 |
nitrate_nitrite (μmol/L) | 2.37 |
nitrate_nitrite_meth | -9999 |
nitrite (μmol/L) | 0.132 |
nitrite_meth | -9999 |
npic (mg/L) | -9999.0 |
npoc (mg/L) | -9999.0 |
nucl_acid_ext | meth_3.1.4 |
omics | Genomics |
oxygen (μmol/L) | -9999.0 |
oxygen_ctd_vol (mL/L) | -9999.0 |
part_org_carb (μmol/L) | -9999.0 |
pass_fail | P |
ph | 8.25 |
ph_meth | -9999 |
phosphate (μmol/L) | 0.092 |
phosphate_meth | -9999 |
pn (μmol/L) | -9999.0 |
read_length | 250bp |
reads | 70532.0 |
salinity_lab (PSU) | 34.6 |
salinity_lab_meth | -9999 |
samp_collect_device | meth_1.7 |
samp_mat_process | meth_1.7 |
sample_attribution | -9999 |
sample_database_file | AM_db_v4.2_202408091431.db |
sample_extraction_id | 58434_1 |
sample_id | 102.100.100/58434 |
sample_metadata_ingest_date | 2024-06-21 15:31:43 |
sample_metadata_ingest_file | coastalMM_Coastal_water_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
sample_site_location_description | Cobblers Beach |
sample_submission_date | 2018-11-22 |
sample_submitter | Rendy Ruvindy |
sample_type | Coastal water |
sio2 (μmol/L) | -9999.0 |
source_mat_id | 102.100.100/58434 |
store_cond | meth_1.7 |
target | 18S |
temp (degC) | 17.6 |
temp_meth | -9999 |
ticket | BPAOPS-754 |
tot_carb (%) | 0.000809 |
tot_carb_meth | -9999 |
total_co2 (μmol/kg) | 2170.76 |
total_co2_meth | -9999 |
total_inorganic_carbon (%) | -9999.0 |
tss (mg/L) | -9999.0 |
turbidity (NTU) | -9999.0 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/58434 |
utc_date_sampled | 2016-11-02 |
utc_time_sampled | 21:30:00 |