Marine Microbes Amplicons 18S 102.100.100/58432 C59W3
Dataset size is: 18.50 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2019-02-20 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
alkalinity (µmol/kg) | 2560.655 |
am_environment | Marine |
ammonium (µmol/L) | 3.27069128 |
amplicon | 18S |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
archive_ingestion_date | 2018-11-23 |
biotic_relationship | Free-living |
chlorophyll_a (mg/m3) | 1.931115239 |
coastal_id | CB_PL_031116_1 |
collection_date | 2016-11-03T08:30:00 |
comments | 58432_1_18S_UNSW_TAAGGCGA_ACTGCATA_C59W3 |
conductivity_aqueous (S/m) | 34.56 |
data_generated | 2018-11-23 |
data_type | 18S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/18s/ramaciotti/BPAOPS-752/ |
date_of_transfer | 2018-11-22 |
depth (m) | 1.0 |
depth_lower (m) | 1.0 |
depth_upper (m) | 1.0 |
description | MM |
dilution_used | neat |
env_medium | Sea water [ENVO_00002149] |
facility | RAMACIOTTI |
flow_id | C59W3 |
folder_name | 20181122_UNSW_BPA_MM_C59W3 |
geo_loc_name | Australia:New South Wales |
lat_lon (decimal_degrees) | -33.825633 151.263307 |
latitude (decimal_degrees) | -33.825633 |
longitude (decimal_degrees) | 151.263307 |
mm_amplicon_linkage | C59W3 |
nitrite (µmol/L) | 0.24727747 |
omics | Genomics |
pass_fail | P |
ph | 8.22 |
phosphate (µmol/L) | 0.105294857 |
read_length | 250bp |
reads | 54720.0 |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_extraction_id | 58432_1 |
sample_id | 102.100.100/58432 |
sample_metadata_ingest_date | 2021-04-23 11:19:12 |
sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; |
sample_site_location_description | Cobblers Beach |
sample_submission_date | 2018-11-22 |
sample_type | Coastal water |
source_mat_id | 102.100.100/58432 |
target | 18S |
ticket | BPAOPS-754 |
total_co2 (µmol/kg) | 2192.457764 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/58432 |
utc_date_sampled | 2016-11-03 |
utc_time_sampled | 08:30:00 |