Marine Microbes Amplicons 18S 102.100.100/57818 BF52K
Dataset size is: 56.54 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-01-31 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | 18S |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2017-11-03 |
| biotic_relationship | Free-living |
| coastal_id | BI_050617_2 |
| collection_date | 2017-06-05T14:00:00 |
| comments | 57818_1_18S_UNSW_CGATCAGT_CTATTAAG_BF52K |
| contextual_data_submission_date | 2017-08-21 |
| data_generated | 2017-11-03 |
| data_type | 18S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/18s/ramaciotti/BPAOPS-386/ |
| date_of_transfer | 2017-11-02 |
| depth (m) | 3.0 |
| depth_lower (m) | 3.0 |
| depth_upper (m) | 3.0 |
| description | MM |
| dilution_used | neat |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.3 Coastal water-intensive use |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| fine_sediment (%) | 1.14 |
| flow_id | BF52K |
| folder_name | 20171102_UNSW_BPA_MM_BF52K.tar |
| funding_agency | UNSW; Betty and Gordon Moore Foundation |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
| lat_lon (decimal_degrees) | -33.991414 151.233356 |
| latitude (decimal_degrees) | -33.991414 |
| longitude (decimal_degrees) | 151.233356 |
| mm_amplicon_linkage | BF52K |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08954232 |
| omics | Genomics |
| pass_fail | P |
| read_length | 250bp |
| reads | 155224.0 |
| sample_attribution | UNSW; Betty and Gordon Moore Foundation |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_extraction_id | 57818_1 |
| sample_id | 102.100.100/57818 |
| sample_metadata_ingest_date | 2021-04-23 11:19:12 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; ;Bare_island_metadata_ncbitaxid_JV_FullREPLACE_xlsx |
| sample_site_location_description | Bare Island |
| sample_submission_date | 2017-11-02 |
| sample_submitter | Torsten Thomas [https://orcid.org/0000-0001-9557-3001]; Katherine Dafforn |
| sample_type | Sediment |
| source_mat_id | 102.100.100/57818 |
| submitter | Katherine Dafforn |
| target | 18S |
| ticket | BPAOPS-386 |
| tot_carb (%) | 6.77 |
| tot_nitro (%) | 0.08 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57818 |
| utc_date_sampled | 2017-06-05 |
| utc_time_sampled | 14:00:00 |
| work_order | 20012 |