Marine Microbes Amplicons 18S 102.100.100/36800 BBPY6
Dataset size is: 26.97 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-01-07 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | 18S |
| analysis_software_version | 2.5.1.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2017-10-20 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Host associated |
| coastal_id | CR_GA_060217_2 |
| collection_date | 2017-02-06T02:30:00 |
| comments | 36800_1_18s_UNSW_GTAGAGGA_TTATGCGA_BBPY6 |
| contextual_data_submission_date | 2017-07-20 |
| data_generated | 2017-10-20 |
| data_type | 18S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/18s/ramaciotti/BPAOPS-347/ |
| date_of_transfer | 2017-10-09 |
| depth (m) | 12.5 |
| depth_lower (m) | 12.5 |
| depth_upper (m) | 12.5 |
| description | MM |
| dilution_used | neat |
| env_broad_scale | -9999 |
| env_local_scale | -9999 |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | BBPY6 |
| folder_name | 20171009_UNSW_BPA_MM_BBPY6 |
| funding_agency | -9999 |
| general_env_feature | -9999 |
| geo_loc_name | Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ_00051147] |
| host_abundance (individuals/m2) | -9999.0 |
| host_associated_microbiome_zone | -9999 |
| host_state | healthy |
| host_type | Coral |
| lat_lon (decimal_degrees) | -31.86344 115.7076 |
| latitude (decimal_degrees) | -31.86344 |
| longitude (decimal_degrees) | 115.7076 |
| mm_amplicon_linkage | BBPY6 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08954089 |
| nucl_acid_ext | meth_3.1.6 |
| omics | Genomics |
| pam_fluorometer | -9999.0 |
| pass_fail | P |
| read_length | 250bp |
| reads | 91065.0 |
| samp_collect_device | meth_1.14 |
| samp_mat_process | meth_1.14 |
| sample_attribution | -9999 |
| sample_database_file | AM_db_v4.2_202410080900.db |
| sample_extraction_id | 36800_1 |
| sample_id | 102.100.100/36800 |
| sample_metadata_ingest_date | 2024-06-21 15:31:12 |
| sample_metadata_ingest_file | coastalMM_Coral_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
| sample_site_location_description | Centaur Reef |
| sample_submission_date | 2017-10-09 |
| sample_submitter | Rachele Bernasconi |
| sample_type | Coral |
| source_mat_id | 102.100.100/36800 |
| specific_host | Turbinaria mesenterina [NCBI:txid51073] |
| store_cond | meth_1.14 |
| submitter | Rachele Bernasconi |
| target | 18S |
| ticket | BPAOPS-347 |
| touching_organisms | algae; rock; seidment; sponges |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/36800 |
| utc_date_sampled | 2017-02-06 |
| utc_time_sampled | 02:30:00 |