Marine Microbes Amplicons 18S 102.100.100/36794 BBPY6
Dataset size is: 32.67 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-01-07 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | 18S |
| analysis_software_version | 2.5.1.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2017-10-20 |
| biotic_relationship | Host associated |
| coastal_id | CR_GA_161216_2 |
| collection_date | 2016-12-16T09:30:00 |
| comments | 36794_1_18s_UNSW_GTAGAGGA_TTCTAGCT_BBPY6 |
| contextual_data_submission_date | 2017-07-20 |
| data_generated | 2017-10-20 |
| data_type | 18S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/18s/ramaciotti/BPAOPS-347/ |
| date_of_transfer | 2017-10-09 |
| depth (m) | 13.1 |
| depth_lower (m) | 13.1 |
| depth_upper (m) | 13.1 |
| description | MM |
| dilution_used | neat |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | BBPY6 |
| folder_name | 20171009_UNSW_BPA_MM_BBPY6 |
| geo_loc_name | Australia:Perth |
| host_type | Coral |
| lat_lon (decimal_degrees) | -31.86344 115.7076 |
| latitude (decimal_degrees) | -31.86344 |
| longitude (decimal_degrees) | 115.7076 |
| mm_amplicon_linkage | BBPY6 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08954083 |
| omics | Genomics |
| pass_fail | P |
| read_length | 250bp |
| reads | 121400.0 |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_extraction_id | 36794_1 |
| sample_id | 102.100.100/36794 |
| sample_metadata_ingest_date | 2021-04-23 11:19:12 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | host_biotic_relationship_UPDATE_xlsx; Host_NCBI_taxonomies_UPDATE_xlsx; |
| sample_site_location_description | Centaur Reef |
| sample_submission_date | 2017-10-09 |
| sample_submitter | Rachele Bernasconi |
| sample_type | Coral |
| source_mat_id | 102.100.100/36794 |
| specific_host | Turbinaria mesenterina [NCBI:txid51073] |
| submitter | Rachele Bernasconi |
| target | 18S |
| ticket | BPAOPS-347 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/36794 |
| utc_date_sampled | 2016-12-16 |
| utc_time_sampled | 09:30:00 |