Marine Microbes Amplicons 16S 102.100.100/57988 BJT3V
Dataset size is: 22.81 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-03-06 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | 16S |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2017-12-06 |
| biotic_relationship | Host associated |
| coastal_id | CB_ER_051016_3 |
| collection_date | 2016-10-05T11:00:00 |
| comments | 57988_1_16S_UNSW_TCGTCGAT_CTAGTATG_BJT3V |
| contextual_data_submission_date | 2017-09-27 |
| data_generated | 2017-12-06 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-425/ |
| date_of_transfer | 2017-12-06 |
| depth (m) | 1.5 |
| depth_lower (m) | 1.5 |
| depth_upper (m) | 1.5 |
| description | MM |
| dilution_used | neat |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | BJT3V |
| folder_name | 20171206_UNSW_BPA_MM_BJT3V |
| geo_loc_name | Australia:New South Wales |
| host_abundance (individuals/m2) | 30.0 |
| host_length (cm) | 30.0 |
| host_type | Seaweed |
| information | light out: PAR (from PAM) values out of the water; light in: at depth recorded. host state / condition: 4 categories: D=discoloured; Bl = bleached; Bo= blotches; F=fouled. Percentages % of thallus D;Bl;F or Grazed; 5 categories: 1=<10; 2=10-25; 3=25-50; 4=50-75; 5=>75. touching: 2 categories: Y=yes; N=no. Densities were quantified at each site at first sampling time; n=10 quadrats (50x50cm); adults and recruits recorded. PAM: maximum quantum yield. |
| lat_lon (decimal_degrees) | -33.825374 151.263177 |
| latitude (decimal_degrees) | -33.825374 |
| longitude (decimal_degrees) | 151.263177 |
| mm_amplicon_linkage | BJT3V |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08954353 |
| omics | Genomics |
| pam_fluorometer | 642.0 |
| pass_fail | P |
| read_length | 300bp |
| reads | 68756.0 |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_extraction_id | 57988_1 |
| sample_id | 102.100.100/57988 |
| sample_metadata_ingest_date | 2021-04-23 11:19:12 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | AMsample_curate_textField_replace_commas_with_semicolon_UPDATE_xlsx; host_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; Host_NCBI_taxonomies_UPDATE_xlsx; |
| sample_site_location_description | Cobblers Beach |
| sample_submission_date | 2017-12-06 |
| sample_submitter | Jessica Taylor |
| sample_type | Seaweed |
| source_mat_id | 102.100.100/57988 |
| specific_host | Ecklonia radiata [NCBI:txid309355] |
| submitter | Jessica Taylor |
| target | 16S |
| ticket | BPAOPS-425 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57988 |
| utc_date_sampled | 2016-10-05 |
| utc_time_sampled | 11:00:00 |
| work_order | 20015 |