Marine Microbes Amplicons 16S 102.100.100/57917 BJT3V
Dataset size is: 15.41 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2018-03-06 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
am_environment | Marine |
amplicon | 16S |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
archive_ingestion_date | 2017-12-06 |
biotic_relationship | Host associated |
coastal_id | BI_ER_050617_3 |
collection_date | 2017-06-05T14:30:00 |
comments | 57917_1_16S_UNSW_TCTGTTGC_ACGCGTGA_BJT3V |
contextual_data_submission_date | 2017-09-27 |
data_generated | 2017-12-06 |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-425/ |
date_of_transfer | 2017-12-06 |
depth (m) | 2.0 |
depth_lower (m) | 2.0 |
depth_upper (m) | 2.0 |
description | MM |
dilution_used | neat |
env_broad_scale | 7 Other |
env_local_scale | 7.1.3 Coastal water-intensive use |
env_medium | Sea water [ENVO_00002149] |
facility | RAMACIOTTI |
flow_id | BJT3V |
folder_name | 20171206_UNSW_BPA_MM_BJT3V |
fouling | 10.0 |
funding_agency | UNSW; Betty and Gordon Moore Foundation |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
grazing (%) | 10.0 |
host_abundance (individuals/m2) | 75.0 |
host_abundance_seaweed_mean (individuals/m2) | 13.2 |
host_length (cm) | 75.0 |
host_state | Blotches |
host_type | Seaweed |
information | light out: PAR (from PAM) values out of the water; light in: at depth recorded. host state / condition: 4 categories: D=discoloured; Bl = bleached; Bo= blotches; F=fouled. Percentages % of thallus D;Bl;F or Grazed; 5 categories: 1=<10; 2=10-25; 3=25-50; 4=50-75; 5=>75. touching: 2 categories: Y=yes; N=no. Densities were quantified at each site at first sampling time; n=10 quadrats (50x50cm); adults and recruits recorded. PAM: maximum quantum yield. |
lat_lon (decimal_degrees) | -33.990771 151.23245 |
latitude (decimal_degrees) | -33.990771 |
longitude (decimal_degrees) | 151.23245 |
mm_amplicon_linkage | BJT3V |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_biosample_accession | SAMN08954282 |
omics | Genomics |
pam_fluorometer | 784.0 |
pass_fail | P |
read_length | 300bp |
reads | 40632.0 |
sample_attribution | UNSW; Betty and Gordon Moore Foundation |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_extraction_id | 57917_1 |
sample_id | 102.100.100/57917 |
sample_metadata_ingest_date | 2021-04-23 11:19:12 |
sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
sample_metadata_update_history | AMsample_curate_textField_replace_commas_with_semicolon_UPDATE_xlsx; host_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; Host_NCBI_taxonomies_UPDATE_xlsx; ;Bare_island_metadata_ncbitaxid_JV_FullREPLACE_xlsx |
sample_site_location_description | Bare Island |
sample_submission_date | 2017-12-06 |
sample_submitter | Torsten Thomas [https://orcid.org/0000-0001-9557-3001]; Jessica Taylor |
sample_type | Seaweed |
source_mat_id | 102.100.100/57917 |
specific_host | Ecklonia radiata [NCBI:txid309355] |
submitter | Jessica Taylor |
target | 16S |
ticket | BPAOPS-425 |
touching_organisms | kelp |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57917 |
utc_date_sampled | 2017-06-05 |
utc_time_sampled | 14:30:00 |
work_order | 20015 |