Marine Microbes Amplicons 16S 102.100.100/57902 BJT3V
Dataset size is: 23.66 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-03-06 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | 16S |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2017-12-06 |
| average_host_abundance (%) | -9999.0 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Host associated |
| bleaching (%) | -9999.0 |
| coastal_id | BH_ER_070616_3 |
| collection_date | 2016-06-07T00:00:00 |
| comments | 57902_1_16S_UNSW_AATGGAGC_CGATCTAC_BJT3V |
| contextual_data_submission_date | 2017-09-27 |
| data_generated | 2017-12-06 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-425/ |
| date_of_transfer | 2017-12-06 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MM |
| dilution_used | neat |
| env_broad_scale | -9999 |
| env_local_scale | -9999 |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | BJT3V |
| folder_name | 20171206_UNSW_BPA_MM_BJT3V |
| fouling (%) | 10.0 |
| fouling_meth | meth_1.13 |
| funding_agency | -9999 |
| general_env_feature | -9999 |
| geo_loc_name | Australia:Port Jackson [GAZ_00045322] |
| grazing (%) | 10.0 |
| grazing_meth | meth_1.13 |
| grazing_number (individuals/m2) | -9999.0 |
| host_abundance (individuals/m2) | 59.0 |
| host_abundance_meth | meth_1.13 |
| host_abundance_seaweed_mean (individuals/m2) | 11.6 |
| host_abundance_seaweed_mean_meth | meth_1.13 |
| host_length (cm) | 59.0 |
| host_length_meth | meth_1.13 |
| host_state | Healthy |
| host_type | Seaweed |
| information | light out: PAR (from PAM) values out of the water; light in: at depth recorded. host state / condition: 4 categories: D=discoloured; Bl = bleached; Bo= blotches; F=fouled. Percentages % of thallus D;Bl;F or Grazed; 5 categories: 1=<10; 2=10-25; 3=25-50; 4=50-75; 5=>75. touching: 2 categories: Y=yes; N=no. Densities were quantified at each site at first sampling time; n=10 quadrats (50x50cm); adults and recruits recorded. PAM: maximum quantum yield. |
| lat_lon (decimal_degrees) | -33.847209 151.198361 |
| latitude (decimal_degrees) | -33.847209 |
| longitude (decimal_degrees) | 151.198361 |
| mm_amplicon_linkage | BJT3V |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08954267 |
| nucl_acid_ext | meth_3.1.5 |
| omics | Genomics |
| pam_fluorometer | 788.0 |
| pam_fluorometer_meth | meth_2.19 |
| pass_fail | P |
| read_length | 300bp |
| reads | 73449.0 |
| samp_collect_device | meth_1.13 |
| samp_mat_process | meth_1.13 |
| sample_attribution | -9999 |
| sample_database_file | AM_db_v4.2_202410080900.db |
| sample_extraction_id | 57902_1 |
| sample_id | 102.100.100/57902 |
| sample_metadata_ingest_date | 2024-06-21 15:30:54 |
| sample_metadata_ingest_file | coastalMM_Seaweed_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
| sample_site_location_description | Balls Head |
| sample_submission_date | 2017-12-06 |
| sample_submitter | Jessica Taylor |
| sample_type | Seaweed |
| source_mat_id | 102.100.100/57902 |
| specific_host | Ecklonia radiata [NCBI:txid309355] |
| store_cond | meth_1.13 |
| submitter | Jessica Taylor |
| target | 16S |
| ticket | BPAOPS-425 |
| touching_organisms | no vis |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57902 |
| utc_date_sampled | 2016-06-07 |
| utc_time_sampled | 00:00:00 |
| work_order | 20015 |