Marine Microbes Amplicons 16S 102.100.100/57832 BH3PP
Dataset size is: 107.23 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2018-01-29 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
am_environment | Marine |
amplicon | 16S |
analysis_software_version | 2.5.1.3 |
analytical_platform | MiSeq |
archive_ingestion_date | 2017-10-31 |
biotic_relationship | Free-living |
coastal_id | BI_110816_2 |
collection_date | 2016-08-11T14:00:00 |
comments | 57832_1_16S_UNSW_TTAGGGCT_GTCTAGTG_BH3PP |
contextual_data_submission_date | 2017-08-21 |
data_generated | 2017-10-31 |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-378/ |
date_of_transfer | 2017-10-31 |
depth (m) | 3.0 |
depth_lower (m) | 3.0 |
depth_upper (m) | 3.0 |
description | MM |
dilution_used | neat |
env_broad_scale | 7 Other |
env_local_scale | 7.1.3 Coastal water-intensive use |
env_medium | Sea water [ENVO_00002149] |
facility | RAMACIOTTI |
fine_sediment (%) | 0.0 |
flow_id | BH3PP |
folder_name | 20171031_UNSW_BPA_MM_BH3PP |
funding_agency | UNSW; Betty and Gordon Moore Foundation |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
lat_lon (decimal_degrees) | -33.991414 151.233356 |
latitude (decimal_degrees) | -33.991414 |
longitude (decimal_degrees) | 151.233356 |
mm_amplicon_linkage | BH3PP |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_biosample_accession | SAMN08954246 |
omics | Genomics |
pass_fail | P |
read_length | 300bp |
reads | 221087.0 |
sample_attribution | UNSW; Betty and Gordon Moore Foundation |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_extraction_id | 57832_1 |
sample_id | 102.100.100/57832 |
sample_metadata_ingest_date | 2021-04-23 11:19:12 |
sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; ;Bare_island_metadata_ncbitaxid_JV_FullREPLACE_xlsx |
sample_site_location_description | Bare Island |
sample_submission_date | 2017-10-31 |
sample_submitter | Torsten Thomas [https://orcid.org/0000-0001-9557-3001]; Katherine Dafforn |
sample_type | Sediment |
source_mat_id | 102.100.100/57832 |
submitter | Katherine Dafforn |
target | 16S |
ticket | BPAOPS-378 |
tot_carb (%) | 10.2 |
tot_nitro (%) | 1.16 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57832 |
utc_date_sampled | 2016-08-11 |
utc_time_sampled | 14:00:00 |
work_order | 20012 |