Marine Microbes Amplicons 16S 102.100.100/37230 BGJC6
Dataset size is: 71.66 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-03-05 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| alkalinity (μmol/kg) | 2280.5 |
| am_environment | Marine |
| amplicon | 16S |
| analysis_software_version | 2.5.1.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2017-12-05 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Free-living |
| collection_date | 2016-06-02T14:08:22 |
| comments | 37230_1_16S_UNSW_AGCTTGAC_CGATCTAC_BGJC6 |
| contextual_data_submission_date | 2017-09-28 |
| data_generated | 2017-12-05 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-420/ |
| date_of_transfer | 2017-12-05 |
| depth (m) | 536.1 |
| depth_lower (m) | 536.1 |
| depth_upper (m) | 536.1 |
| description | MM |
| dilution_used | neat |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | BGJC6 |
| folder_name | 20171205_UNSW_BPA_MM_BGJC6 |
| geo_loc_name | Pacific Ocean [GAZ_00000360] |
| lat_lon (decimal_degrees) | -35.33387 -170.00248 |
| latitude (decimal_degrees) | -35.33387 |
| longitude (decimal_degrees) | -170.00248 |
| mm_amplicon_linkage | BGJC6 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| ncbi_biosample_accession | SAMN08219027 |
| ncbi_biosample_accession_number | SAMN08219027 |
| nitrate_nitrite (μmol/L) | 21.16 |
| nitrite (μmol/L) | 0.0 |
| omics | Genomics |
| oxygen (μmol/L) | 234.4 |
| oxygen_ctd_wt (μmol/kg) | 235.1 |
| pass_fail | P |
| phosphate (μmol/L) | 1.44 |
| pres_rel (dbar) | 536.1 |
| read_length | 300bp |
| reads | 163181.0 |
| salinity (PSU) | 34.426 |
| salinity_lab (PSU) | 34.425 |
| sample_database_file | AM_db_v4.2_202410080900.db |
| sample_extraction_id | 37230_1 |
| sample_id | 102.100.100/37230 |
| sample_metadata_ingest_date | 2021-04-23 11:19:12 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; |
| sample_site_location_description | 6825 |
| sample_submission_date | 2017-12-05 |
| sample_submitter | Jodie van de Kamp |
| sample_type | Pelagic |
| silicate (μmol/L) | 5.98 |
| source_mat_id | 102.100.100/37230 |
| submitter | Jodie van de Kamp |
| target | 16S |
| temp (degC) | 7.46 |
| ticket | BPAOPS-420 |
| tot_depth_water_col (m) | 4914.0 |
| total_co2 (μmol/kg) | 2144.5 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/37230 |
| utc_date_sampled | 2016-06-02 |
| utc_time_sampled | 14:08:22 |
| voyage_code | IN2016_v03 |
| work_order | 20011 |