Marine Microbes Amplicons 16S 102.100.100/36582 BGCP2
Dataset size is: 14.71 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2018-01-07 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
am_environment | Marine |
amplicon | 16S |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
archive_ingestion_date | 2017-10-20 |
bioplatforms_project | Marine Microbes Project (MM) |
biotic_relationship | Host associated |
coastal_id | OI_Channel |
collection_date | 2017-05-08T01:00:00 |
comments | 36582_1_16S_UNSW_ATGTGCAC_TCTACACT_BGCP2 |
contextual_data_submission_date | 2017-07-13 |
data_generated | 2017-10-20 |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-346/ |
date_of_transfer | 2017-10-09 |
depth (m) | 3.0 |
depth_lower (m) | 3.0 |
depth_upper (m) | 3.0 |
description | MM |
dilution_used | 2 x template |
env_broad_scale | -9999 |
env_local_scale | -9999 |
env_medium | Sea water [ENVO_00002149] |
facility | RAMACIOTTI |
flow_id | BGCP2 |
folder_name | 20171009_UNSW_BPA_MM_BGCP2 |
funding_agency | -9999 |
general_env_feature | -9999 |
geo_loc_name | Australia:Great Barrier Reef Marine Park [GAZ_00049080] |
host_abundance (individuals/m2) | -9999.0 |
host_associated_microbiome_zone | mucus |
host_state | -9999 |
host_type | Coral |
lat_lon (decimal_degrees) | -18.574387 146.496432 |
latitude (decimal_degrees) | -18.574387 |
longitude (decimal_degrees) | 146.496432 |
mm_amplicon_linkage | BGCP2 |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_biosample_accession | SAMN08953558 |
nucl_acid_ext | meth_3.1.6 |
omics | Genomics |
pam_fluorometer | -9999.0 |
pass_fail | P |
read_length | 300bp |
reads | 35045.0 |
samp_collect_device | meth_1.14 |
samp_mat_process | meth_1.14 |
sample_attribution | -9999 |
sample_database_file | AM_db_v4.2_202408091431.db |
sample_extraction_id | 36582_1 |
sample_id | 102.100.100/36582 |
sample_metadata_ingest_date | 2024-06-21 15:31:12 |
sample_metadata_ingest_file | coastalMM_Coral_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
sample_site_location_description | Orpheus Island:Channel |
sample_submission_date | 2017-10-09 |
sample_submitter | Bettina Glasl |
sample_type | Coral |
source_mat_id | 102.100.100/36582 |
specific_host | Acropora tenuis [NCBI:txid70783] |
store_cond | meth_1.14 |
submitter | Bettina Glasl |
target | 16S |
ticket | BPAOPS-346 |
touching_organisms | no direct contact; bleached |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/36582 |
utc_date_sampled | 2017-05-08 |
utc_time_sampled | 01:00:00 |
work_order | 20009 |