Marine Microbes Amplicons 16S 102.100.100/36415 BC3BP
Dataset size is: 12.27 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-01-07 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | 16S |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2017-10-20 |
| average_host_abundance (%) | -9999.0 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Host associated |
| bleaching (%) | -9999.0 |
| coastal_id | MI_Geoffrey Bay |
| collection_date | 2016-02-26T01:00:00 |
| comments | 36415_1_16S_UNSW_CCTCGTTC_ACGCGTGA_BC3BP |
| contextual_data_submission_date | 2017-07-13 |
| data_generated | 2017-10-20 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-345/ |
| date_of_transfer | 2017-10-09 |
| depth (m) | 3.0 |
| depth_lower (m) | 3.0 |
| depth_upper (m) | 3.0 |
| description | MM |
| dilution_used | neat |
| env_broad_scale | -9999 |
| env_local_scale | -9999 |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | BC3BP |
| folder_name | 20171009_UNSW_BPA_MM_BC3BP |
| fouling (%) | -9999.0 |
| funding_agency | -9999 |
| general_env_feature | -9999 |
| geo_loc_name | Australia:Great Barrier Reef Marine Park [GAZ_00049080] |
| grazing (%) | -9999.0 |
| grazing_number (individuals/m2) | -9999.0 |
| host_abundance (individuals/m2) | -9999.0 |
| host_abundance_seaweed_mean (individuals/m2) | -9999.0 |
| host_length (cm) | -9999.0 |
| host_state | -9999 |
| host_type | Seaweed |
| lat_lon (decimal_degrees) | -19.154109 146.6426 |
| latitude (decimal_degrees) | -19.154109 |
| longitude (decimal_degrees) | 146.6426 |
| mm_amplicon_linkage | BC3BP |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08953391 |
| nucl_acid_ext | meth_3.1.5 |
| omics | Genomics |
| pam_fluorometer | -9999.0 |
| pass_fail | P |
| read_length | 300bp |
| reads | 32493.0 |
| samp_collect_device | meth_1.13 |
| samp_mat_process | meth_1.13 |
| sample_attribution | -9999 |
| sample_database_file | AM_db_v4.2_202408091431.db |
| sample_extraction_id | 36415_1 |
| sample_id | 102.100.100/36415 |
| sample_metadata_ingest_date | 2024-06-21 15:30:54 |
| sample_metadata_ingest_file | coastalMM_Seaweed_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
| sample_site_location_description | Magnetic Island:Geoffrey Bay |
| sample_submission_date | 2017-10-09 |
| sample_submitter | Bettina Glasl |
| sample_type | Seaweed |
| source_mat_id | 102.100.100/36415 |
| specific_host | Sargassum sp. [NCBI:txid74090] |
| store_cond | meth_1.13 |
| submitter | Bettina Glasl |
| target | 16S |
| ticket | BPAOPS-345 |
| touching_organisms | -9999 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/36415 |
| utc_date_sampled | 2016-02-26 |
| utc_time_sampled | 01:00:00 |
| work_order | 20009 |