Marine Microbes Amplicons 16S 102.100.100/35055 AYBVB
Dataset size is: 61.29 MiB
Data and Resources
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2017-03-01 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
am_environment | Marine |
amplicon | 16S |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
archive_ingestion_date | 2016-12-01 |
average_host_abundance (%) | -9999.0 |
bioplatforms_project | Marine Microbes Project (MM) |
biotic_relationship | Host associated |
bleaching (%) | 10.0 |
bleaching_meth | meth_1.13 |
coastal_id | WR_ER_270716_2_D |
collection_date | 2016-07-27T03:30:00 |
contextual_data_submission_date | 2016-09-21 |
data_generated | 2016-12-01 |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-65/ |
date_of_transfer | 2016-12-01 |
depth (m) | 5.5 |
depth_lower (m) | 5.5 |
depth_upper (m) | 5.5 |
description | MM |
dilution_used | neat |
env_broad_scale | -9999 |
env_local_scale | -9999 |
env_medium | Sea water [ENVO_00002149] |
facility | RAMACIOTTI |
flow_id | AYBVB |
folder_name | 20161201_UNSW_BPA_MM_AYBVB |
fouling (%) | 0.0 |
fouling_meth | meth_1.13 |
funding_agency | -9999 |
general_env_feature | -9999 |
geo_loc_name | Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ_00051147] |
grazing (%) | -9999.0 |
grazing_number (individuals/m2) | 1.0 |
grazing_number_meth | meth_1.13 |
host_abundance (individuals/m2) | -9999.0 |
host_abundance_seaweed_mean (individuals/m2) | -9999.0 |
host_length (cm) | 47.0 |
host_length_meth | meth_1.13 |
host_state | Healthy |
host_type | Seaweed |
lat_lon (decimal_degrees) | -31.803506 115.718447 |
latitude (decimal_degrees) | -31.803506 |
longitude (decimal_degrees) | 115.718447 |
mm_amplicon_linkage | AYBVB |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_bioproject_accession_number | PRJNA385736 |
ncbi_biosample_accession | SAMN08219507 |
ncbi_biosample_accession_number | SAMN08219507 |
nucl_acid_ext | meth_3.1.5 |
omics | Genomics |
pam_fluorometer | 697.0 |
pam_fluorometer_meth | meth_2.19 |
pass_fail | P |
read_length | 300bp |
reads | 140831.0 |
samp_collect_device | meth_1.13 |
samp_mat_process | meth_1.13 |
sample_attribution | -9999 |
sample_database_file | AM_db_v4.2_202408091431.db |
sample_extraction_id | 35055_1 |
sample_id | 102.100.100/35055 |
sample_metadata_ingest_date | 2024-06-21 15:30:54 |
sample_metadata_ingest_file | coastalMM_Seaweed_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
sample_site_location_description | Wreck Rock |
sample_submission_date | 2016-12-01 |
sample_submitter | Rachele Bernasconi;Megan Huggett |
sample_type | Seaweed |
source_mat_id | 102.100.100/35055 |
specific_host | Ecklonia radiata [NCBI:txid309355] |
store_cond | meth_1.13 |
submitter | Rachele Bernasconi |
target | 16S |
ticket | BPAOPS-65 |
touching_organisms | Kelp; rock+turf; algae |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/35055 |
utc_date_sampled | 2016-07-27 |
utc_time_sampled | 03:30:00 |
work_order | 20004 |