Marine Microbes Amplicons 16S 102.100.100/35033 AW0AY
Dataset size is: 37.53 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2017-03-01 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
am_environment | Marine |
amplicon | 16S |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
archive_ingestion_date | 2016-12-01 |
average_host_abundance (%) | 4.0 |
biotic_relationship | Host associated |
bleaching | 10.0 |
coastal_id | WR_ER_040416_1_D |
collection_date | 2016-04-04T11:00:00 |
comments | 35033_1_16S_UNSW_ACGCGCAG-GATAGCGT_AW0AY |
contextual_data_submission_date | 2016-09-21 |
data_generated | 2016-12-01 |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-64/ |
date_of_transfer | 2016-12-01 |
depth (m) | 4.1 |
depth_lower (m) | 4.1 |
depth_upper (m) | 4.1 |
description | MM |
dilution_used | neat |
env_medium | Sea water [ENVO_00002149] |
facility | RAMACIOTTI |
flow_id | AW0AY |
folder_name | 20161201_UNSW_BPA_MM_AW0AY |
fouling | 45.0 |
geo_loc_name | Australia:Perth |
host_abundance (individuals/m2) | 4.0 |
host_length (cm) | 78.0 |
host_state | 10 % white patches |
host_type | Seaweed |
lat_lon (decimal_degrees) | -31.803506 115.718447 |
latitude (decimal_degrees) | -31.803506 |
longitude (decimal_degrees) | 115.718447 |
mm_amplicon_linkage | AW0AY |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_biosample_accession | SAMN08219485 |
omics | Genomics |
pam_fluorometer | 594.0 |
pass_fail | P |
read_length | 300bp |
reads | 86670.0 |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_extraction_id | 35033_1 |
sample_id | 102.100.100/35033 |
sample_metadata_ingest_date | 2021-04-23 11:19:12 |
sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
sample_metadata_update_history | AMsample_curate_textField_replace_commas_with_semicolon_UPDATE_xlsx; host_biotic_relationship_UPDATE_xlsx; Host_NCBI_taxonomies_UPDATE_xlsx; |
sample_site_location_description | Wreck Rock |
sample_submission_date | 2016-12-01 |
sample_submitter | Rachele Bernasconi |
sample_type | Seaweed |
source_mat_id | 102.100.100/35033 |
specific_host | Ecklonia radiata [NCBI:txid309355] |
submitter | Rachele Bernasconi |
target | 16S |
ticket | BPAOPS-64 |
touching_organisms | Kelp; rock+turf; red algae |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/35033 |
utc_date_sampled | 2016-04-04 |
utc_time_sampled | 11:00:00 |
work_order | 20004 |