Marine Microbes Amplicons 16S 102.100.100/34816 B8R63

Maria Island, 16S MiSeq

Dataset size is: 45.42 MiB

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2017-08-08
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2320.58
alkalinity_meth meth_2.2
allo (mg/m3) 1e-10
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.003
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 1.27
ammonium_meth meth_2.2
amplicon 16S
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2017-05-10
asta (mg/m3) 1e-10
asta_meth meth_2.2
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Marine Microbes Project (MM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 1e-10
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.069
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 1e-10
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.005
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.004
chlorophyll_c3_meth meth_2.2
collection_date 2016-11-18T03:15:00
comments 34816_1_16S_UNSW_CACGGTTG-TCTACACT_B8R63
contextual_data_submission_date 2017-03-16
cphlide_a (mg/m3) 1e-10
cphlide_a_meth meth_2.2
data_generated 2017-05-10
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-155/
date_of_transfer 2017-05-10
depth (m) 85.0
depth_lower (m) 85.0
depth_upper (m) 85.0
description MM
diadchr (mg/m3) 1e-10
diadchr_meth meth_2.2
diadino (mg/m3) 0.003
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.069
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
flow_id B8R63
folder_name 20170510_UNSW_BPA_MM_B8R63
fuco (mg/m3) 0.027
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ_00143737]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.003
hex_fuco_meth meth_2.2
imos_site_code NRSMAI
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
lut (mg/m3) 1e-10
lut_meth meth_2.2
lyco (mg/m3) 1e-10
lyco_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
mm_amplicon_linkage B8R63
ncbi_bioproject_accession PRJNA385736
ncbi_bioproject_accession_number PRJNA385736
ncbi_biosample_accession SAMN07449447
ncbi_biosample_accession_number SAMN07449447
neo (mg/m3) 1e-10
neo_meth meth_2.2
nitrate (μmol/L) 2.9
nitrate_meth meth_2.2
nitrite (μmol/L) 0.27
nitrite_meth meth_2.2
nrs_sample_code MAI20161117_85
nrs_trip_code MAI20161117
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 256.9
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 1e-10
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.42
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 1555.0
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 1e-10
pras_meth meth_2.2
prochlorococcus (cells/mL) 429.0
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
read_length 300bp
reads 97271.0
salinity_lab (PSU) 35.071
salinity_lab_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202408091431.db
sample_extraction_id 34816_1
sample_id 102.100.100/34816
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submission_date 2017-05-10
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 20.0
secchi_depth_meth meth_2.2
silicate (μmol/L) 1.2
silicate_meth meth_2.2
source_mat_id 102.100.100/34816
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 1611.0
synechococcus_meth meth_2.2int
target 16S
ticket BPAOPS-155
total_co2 (μmol/kg) 2108.99
total_co2_meth meth_2.2
tss (mg/L) 2.1
tss_meth meth_2.2int
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34816
utc_date_sampled 2016-11-18
utc_time_sampled 03:15:00
viola (mg/m3) 1e-10
viola_meth meth_2.2
work_order 20005
zea (mg/m3) 1e-10
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 5.677
zooplankton_biomass_meth meth_2.2int