Marine Microbes Amplicons 16S 102.100.100/34310 ATNUK

Kangaroo Island, 16S MiSeq

Dataset size is: 36.73 MiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2016-11-23
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
absorbance_260_280_ratio_submitter 1.96
absorbance_260_280_ratio_submitter_meth meth_3.3.1
alkalinity (µmol/kg) 2357.94
alkalinity_meth meth_2.2
allo (mg/m3) 0.019
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.024
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (µmol/L) 0.08
ammonium_meth meth_2.2
amplicon 16S
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2016-09-14
asta (mg/m3) 1e-10
asta_meth meth_2.2
biotic_relationship Free-living
but_fuco (mg/m3) 0.061
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.42
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.078
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.064
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.062
chlorophyll_c3_meth meth_2.2
collection_date 2016-05-25T22:05:00
comments 34310_1_16S_UNSW_GTACATAC_TCTACACT_ATNUK
contextual_data_submission_date 2016-07-19
cphlide_a (mg/m3) 0.042
cphlide_a_meth meth_2.2
data_generated 2016-09-14
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-7/
date_of_transfer 2016-08-25
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MM
diadchr (mg/m3) 1e-10
diadchr_meth meth_2.2
diadino (mg/m3) 0.017
diadino_meth meth_2.2
diato (mg/m3) 0.004
diato_meth meth_2.2
dilution_used Neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration_submitter (ng/µL) 18.33
dna_concentration_submitter_meth meth_3.3.1
dv_cphl_a (mg/m3) 0.032
dv_cphl_a_and_cphl_a (mg/m3) 0.452
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.078
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
flow_id ATNUK
folder_name 20160825_UNSW_BPA_MM_ATNUK
fuco (mg/m3) 0.036
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Great Australian Bight [GAZ:00045604]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.085
hex_fuco_meth meth_2.2
imos_site_code NRSKAI
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -35.8322 136.4473
latitude (decimal_degrees) -35.8322
longitude (decimal_degrees) 136.4473
lut (mg/m3) 0.004
lut_meth meth_2.2
lyco (mg/m3) 1e-10
lyco_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
mm_amplicon_linkage ATNUK
ncbi_bioproject_accession PRJNA385736
ncbi_biosample_accession SAMN07482711
neo (mg/m3) 0.008
neo_meth meth_2.2
nitrate (µmol/L) 0.4
nitrate_meth meth_2.2
nitrite (µmol/L) 0.2
nitrite_meth meth_2.2
nrs_sample_code KAI20160525_0
nrs_trip_code KAI20160525
nucl_acid_ext meth_3.1.9
omics Genomics
pass_fail P
perid (mg/m3) 0.019
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (µmol/L) 0.13
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 10248.5
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.014
pras_meth meth_2.2
prochlorococcus (cells/mL) 12318.5
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
read_length 300bp
reads 74365.0
salinity_lab (PSU) 35.892
salinity_lab_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_extraction_id 34310_1
sample_id 102.100.100/34310
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_metadata_update_history AODN_AM_NRS_202303010911_FullREPLACE_xlsx;AODN_AM_NRS_202304260934_FullREPLACE_xlsx
sample_site_location_description Kangaroo Island
sample_submission_date 2016-08-25
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 11.5
secchi_depth_meth meth_2.2
silicate (µmol/L) 0.6
silicate_meth meth_2.2
source_mat_id 102.100.100/34310
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 28715.0
synechococcus_meth meth_2.2int
target 16S
ticket BPAOPS-7
total_co2 (µmol/kg) 2121.19
total_co2_meth meth_2.2
tss (mg/L) 3.5
tss_meth meth_2.2int
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34310
utc_date_sampled 2016-05-25
utc_time_sampled 22:05:00
viola (mg/m3) 0.006
viola_meth meth_2.2
work_order 8
zea (mg/m3) 0.029
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 7.4943
zooplankton_biomass_meth meth_2.2int